Evidence map›Paper›PMID 28381262›Full record

ArticleGenome biology2017

Structuring supplemental materials in support of reproducibility.

Dov Greenbaum, Joel Rozowsky, Victoria Stodden, Mark Gerstein

Abstract read
In one paragraph

Article in Genome biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Reproducible Research Using Biomodels.Bulletin of mathematical biology · 2018
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Dov GreenbaumZvi Meitar Institute for Legal Implications of Emerging Technologies, Radzyner Law School, Interdisciplinary Center, Herzliya, Israel.
Joel RozowskyProgram in Computational Biology and Bioinformatics, Yale University, New Haven, CT, 06520, USA.
Victoria StoddenGraduate School of Library and Information Science, University of Illinois at Urbana-Champaign, 501 E Daniel St, Champaign, IL, 61820, USA.
Mark GersteinProgram in Computational Biology and Bioinformatics, Yale University, New Haven, CT, 06520, USA. mark@gersteinlab.org.

Funding

Methods and Software to Enhance Genomic Privacy and Sharing of RNA-Seq DataU01EB023686 · NIBIB · YALE UNIVERSITY · PI GERSTEIN, MARK BENDER · 2016 to 2018
$730k
NIBIB NIH HHS U01 EB023686
6 · The paper itself

Abstract

Supplements are increasingly important to the scientific record, particularly in genomics. However, they are often underutilized. Optimally, supplements should make results findable, accessible, interoperable, and reusable (i.e., "FAIR"). Moreover, properly off-loading to them the data and detail in a paper could make the main text more readable. We propose a hierarchical organization for supplements, with some parts paralleling and "shadowing" the main text and other elements branching off from it, and we suggest a specific formatting to make this structure explicit. Furthermore, sections of the supplement could be presented in multiple scientific "dialects", including machine-readable and lay-friendly formats.

Indexed as

Data DisplayGenomicsHumansPublicationsReproducibility of Results

Identifiers

PMID28381262
PMCPMC5382465

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.