Evidence map›Paper›PMID 28381210›Full record

ArticleBMC molecular biology2017

Identification of suitable reference genes for real-time quantitative PCR analysis of hydrogen peroxide-treated human umbilical vein endothelial cells.

Tianyi Li, Hongying Diao, Lei Zhao, Yue Xing, Jichang Zhang, Ning Liu, Youyou Yan, Xin Tian, Wei Sun, Bin Liu

Open access · hybridAbstract read
In one paragraph

Article in BMC molecular biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 25 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Tianyi LiDepartment of Cardiology, The Second Hospital of Jilin University, Changchun, 130041, Jilin, China.
Hongying DiaoDepartment of Cardiology, The Second Hospital of Jilin University, Changchun, 130041, Jilin, China.
Lei ZhaoDepartment of Cardiology, The Second Hospital of Jilin University, Changchun, 130041, Jilin, China.
Yue XingDepartment of Cardiology, The Second Hospital of Jilin University, Changchun, 130041, Jilin, China.
Jichang ZhangDepartment of Cardiology, The Second Hospital of Jilin University, Changchun, 130041, Jilin, China.
Ning LiuDepartment of Cardiology, The Second Hospital of Jilin University, Changchun, 130041, Jilin, China.
Youyou YanDepartment of Cardiology, The Second Hospital of Jilin University, Changchun, 130041, Jilin, China.
Xin TianDepartment of Cardiology, The Second Hospital of Jilin University, Changchun, 130041, Jilin, China.
Wei SunDepartment of Cardiology, The Second Hospital of Jilin University, Changchun, 130041, Jilin, China.
Bin LiuDepartment of Cardiology, The Second Hospital of Jilin University, Changchun, 130041, Jilin, China. liubin3333@vip.sina.com.
Second Affiliated Hospital of Jilin University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOxidative stress can induce cell injury in vascular endothelial cells, which is the initial event in the development of atherosclerosis. Although quantitative real-time polymerase chain reaction (qRT-PCR) has been widely used in gene expression studies in oxidative stress injuries, using carefully validated reference genes has not received sufficient attention in related studies. The objective of this study, therefore, was to select a set of stably expressed reference genes for use in qRT-PCR normalization in oxidative stress injuries in human umbilical vein endothelial cells (HUVECs) induced by hydrogen peroxide (H

resultsUsing geNorm analysis, we found that five stably expressed reference genes were sufficient for normalization in qRT-PCR analysis in HUVECs treated with H

conclusionTaken together, our study demonstrated that the expression stability of reference genes may differ according to the statistical program used. U6, TFRC, RPLP0, GAPDH, and ACTB was the optimal set of reference genes for studies on gene expression performed by qRT-PCR assays in HUVECs under oxidative stress study.

Indexed as

Oxidative StressTranscriptomeEndothelial CellsGene Expression ProfilingGene Expression RegulationHumansHuman Umbilical Vein Endothelial CellsHydrogen PeroxideReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionHydrogen PeroxideHuman umbilical vein endothelial cellsHydrogen peraoxideNormalizationqRT-PCRReference genes

Identifiers

PMID28381210
PMCPMC5381023
OpenAlexW2552093939

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.