ArticleOptics express2017
Measurement-based estimation of global pupil functions in 3D localization microscopy.
Article in Optics express, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
What it found
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The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
27 citing papers in PubMed.
- Simultaneous particle tracking, phase retrieval and point spread function reconstruction.bioRxiv : the preprint server for biology · 2025Article
- Joint estimation of point spread function and molecule positions in SMLM informed from multiple planes.Biomedical optics express · 2025Article
- Universal inverse modeling of point spread functions for SMLM localization and microscope characterization.Nature methods · 2024Article
- Large-FOV 3D localization microscopy by spatially variant point spread function generation.Science advances · 2024Article
- Universal inverse modelling of point spread functions for SMLM localization and microscope characterization.bioRxiv : the preprint server for biology · 2023Article
- Article
- Deep learning using a residual deconvolutional network enables real-time high-density single-molecule localization microscopy.Biomedical optics express · 2023Article
- Fast and parallel nanoscale three-dimensional tracking of heterogeneous mammalian chromatin dynamics.Molecular biology of the cell · 2022Article
- Image Reconstruction in Light-Sheet Microscopy: Spatially Varying Deconvolution and Mixed Noise.Journal of mathematical imaging and vision · 2022Article
- Accurate localization microscopy by intrinsic aberration calibration.Nature communications · 2021Article
- Effect of Pixelation on the Parameter Estimation of Single Molecule Trajectories.IEEE transactions on computational imaging · 2021Article
- Quantifying accuracy and heterogeneity in single-molecule super-resolution microscopy.Nature communications · 2020Article
- Recent advances in point spread function engineering and related computational microscopy approaches: from one viewpoint.Biophysical reviews · 2020Review
- Microscopic scan-free surface profiling over extended axial ranges by point-spread-function engineering.Science advances · 2020Article
- Addressing systematic errors in axial distance measurements in single-emitter localization microscopy.Optics express · 2020Article
- Three-Dimensional Single-Molecule Localization Microscopy in Whole-Cell and Tissue Specimens.Annual review of biomedical engineering · 2020Review
- Three-dimensional nanoscopy of whole cells and tissues with in situ point spread function retrieval.Nature methods · 2020Article
- Deep learning in single-molecule microscopy: fundamentals, caveats, and recent developments [Invited].Biomedical optics express · 2020Review
- Accurate and rapid background estimation in single-molecule localization microscopy using the deep neural network BGnet.Proceedings of the National Academy of Sciences of the United States of America · 2020Article
- Accurate phase retrieval of complex 3D point spread functions with deep residual neural networks.Applied physics letters · 2019Article
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
We report the use of a phase retrieval procedure based on maximum likelihood estimation (MLE) to produce an improved, experimentally calibrated model of a point spread function (PSF) for use in three-dimensional (3D) localization microscopy experiments. The method estimates a global pupil phase function (which includes both the PSF and system aberrations) over the full axial range from a simple calibration scan. The pupil function is used to refine the PSF model and hence enable superior localizations from experimental data. To demonstrate the utility of the procedure, we apply it to experimental data acquired with a microscope employing a tetrapod PSF with a 6 µm axial range. The phase-retrieved model demonstrates significant improvements in both accuracy and precision of 3D localizations relative to the model based on scalar diffraction theory. The localization precision of the phase-retrieved model is shown to be near the limits imposed by estimation theory, and the reproducibility of the procedure is characterized and discussed. Code which performs the phase retrieval algorithm is provided.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.