ArticleThe Journal of heredity2017
DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution.
Article in The Journal of heredity, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 162 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
162 citing papers in PubMed.
- Mitogenomic Insights into the Tinfoil Barb Barbonymus schwanefeldii from Sumatra, Indonesia: Structural Features, Selective Pressure, Genetic Diversity, and Phylogenetic Placement.Journal of molecular evolution · 2026Article
- Mitogenomic and Ecological Perspectives on the Wide-Ridged Indo-Pacific Finless PorpoiseEcology and evolution · 2026Article
- Optimizing Lankesterella Detection in Avian Hosts: A Comparative Analysis of Microscopic and Molecular Techniques.Integrative zoology · 2026Article
- Mitogenomic Architecture and Phylogenetic Insights Shed Light on the Matrilineal Evolution of the Mahseer Fish Neolissochilus sumatranus (Cyprinidae: Torinae) in Southeast Asia.Biochemical genetics · 2026Article
- Novel Mitogenome ofInternational journal of molecular sciences · 2026Article
- Three new species of Macvicaria Gibson & Bray, 1982 (Digenea: Opecoelidae) infecting Diplodus spp. (Teleostei, Sparidae) from South Africa and Namibia.Systematic parasitology · 2026Article
- Promiscuous nitrilase from Bacillus subtilis for herbicide degradation and plant growth promotion.Scientific reports · 2026Article
- Biodiversity of freshwater planarians (Platyhelminthes, Tricladida, Dugesiidae) in Chile: exploration of unknown species.BMC ecology and evolution · 2026Article
- Comprehensive mitogenomic insights into Hemibagrus velox endemic to Sumatra, Indonesia and its phylogenetic relationships within the Bagridae lineage.BMC genomics · 2026Article
- Ancient DNA and spatial modeling reveal a pre-Inca trans-Andean parrot trade.Nature communications · 2026Article
- Stoichiometry-induced differential selection on codon optimization among ribosomal protein genes in bacterial species.Molecular biology and evolution · 2026Article
- Genomic Insights and Matrilineal Evolution Reveal Potential Dispersal Patterns ofEcology and evolution · 2026Article
- On the conflict between science and ethics: the case of the moggel, Labeo umbratus (Teleostei: Cyprinidae) from South Africa.Journal of fish biology · 2026Article
- Mitogenomic Characterization and Phylogenetic Insights of the Ornamental Sail-Fin Molly (Poecilia velifera) in Non-Native Indonesian Waters.Biochemical genetics · 2026Article
- Mitogenomic Insights into the Hampala Barb (Biomolecules · 2026Article
- The phylogeny and evolution of blow flies (Diptera: Calliphoridae) from the perspective of mitogenomics.BMC genomics · 2026Article
- Mitochondrial genomes of two subspecies ofFrontiers in veterinary science · 2026Article
- Mitogenomic Characterization, Genetic Diversity, and Matrilineal Phylogenetic Insights of the Marbled Goby (International journal of molecular sciences · 2025Article
- Morphological traits and mitogenome of Thaumapsylla breviceps orientalis endemic to China provide insight into the evolution of the order Siphonaptera.Scientific reports · 2025Article
- Elucidating the Mitogenomic Blueprint of Pomadasys perotaei from the Eastern Atlantic: Characterization and Matrilineal Phylogenetic Insights into Haemulid Grunts (Teleostei: Lutjaniformes).Biochemical genetics · 2025Article
102 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
1 author.
Funding
No grant is acknowledged in the PubMed record.
Abstract
DAMBE is a comprehensive software workbench for data analysis in molecular biology, phylogenetics, and evolution. Several important new functions have been added since version 5 of DAMBE: 1) comprehensive genomic profiling of translation initiation efficiency of different genes in different prokaryotic species, 2) a new index of translation elongation (ITE) that takes into account both tRNA-mediated selection and background mutation on codon-anticodon adaptation, 3) a new and accurate phylogenetic approach based on pairwise alignment only, which is useful for highly divergent sequences from which a reliable multiple sequence alignment is difficult to obtain. Many other functions have been updated and improved including PWM for motif characterization, Gibbs sampler for de novo motif discovery, hidden Markov models for protein secondary structure prediction, self-organizing map for nonlinear clustering of transcriptomic data, comprehensive sequence alignment, and phylogenetic functions. DAMBE features a graphic, user-friendly and intuitive interface, and is freely available from http://dambe.bio.uottawa.ca.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.