Evidence map›Paper›PMID 28379442›Full record

ArticleNucleic acids research2017

An RRM-ZnF RNA recognition module targets RBM10 to exonic sequences to promote exon exclusion.

Katherine M Collins, Yaroslav A Kainov, Evangelos Christodolou, Debashish Ray, Quaid Morris, Timothy Hughes, Ian A Taylor, Eugene V Makeyev, Andres Ramos

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 44 citations in OpenAlex.

  1. PTBP1 and Cancer: From RNA Regulation to Therapeutic Potential.Journal of cellular and molecular medicine · 2025
    Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. RNA binding proteins in cardiovascular development and disease.Current topics in developmental biology · 2024
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. RNA binding proteins in osteoarthritis.Frontiers in cell and developmental biology · 2022
    Review
  13. Review
  14. RNA-binding proteins in human genetic disease.Nature reviews. Genetics · 2021
    Review
  15. Review
  16. Article
  17. Article
  18. Review
  19. RNA-binding proteins in tumor progression.Journal of hematology & oncology · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Katherine M CollinsInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
Yaroslav A KainovCentre for Developmental Neurobiology, King's College London, London SE1 1UL, UK.
Evangelos ChristodolouStructural Biology Science Technology Platform, The Francis Crick Institute, London NW1 1AT, UK.
Debashish RayDonnelly Centre, University of Toronto, Toronto M5S 3E1, Canada.
Quaid MorrisDonnelly Centre, University of Toronto, Toronto M5S 3E1, Canada.
Timothy HughesDonnelly Centre, University of Toronto, Toronto M5S 3E1, Canada.
Ian A TaylorMacromolecular Structure Laboratory, The Francis Crick Institute, London NW1 1AT, UK.
Eugene V MakeyevCentre for Developmental Neurobiology, King's College London, London SE1 1UL, UK.
Andres RamosInstitute of Structural and Molecular Biology, University College London, London, WC1E 6BT, UK.
University of Toronto · CAInstitute of Structural and Molecular Biology · GBKing's College London · GBThe Francis Crick Institute · GB

Funding

Medical Research Council MC_PC_13051Medical Research Council MC_U117533887Medical Research Council MC_U117574558
6 · The paper itself

Abstract

RBM10 is an RNA-binding protein that plays an essential role in development and is frequently mutated in the context of human disease. RBM10 recognizes a diverse set of RNA motifs in introns and exons and regulates alternative splicing. However, the molecular mechanisms underlying this seemingly relaxed sequence specificity are not understood and functional studies have focused on 3΄ intronic sites only. Here, we dissect the RNA code recognized by RBM10 and relate it to the splicing regulatory function of this protein. We show that a two-domain RRM1-ZnF unit recognizes a GGA-centered motif enriched in RBM10 exonic sites with high affinity and specificity and test that the interaction with these exonic sequences promotes exon skipping. Importantly, a second RRM domain (RRM2) of RBM10 recognizes a C-rich sequence, which explains its known interaction with the intronic 3΄ site of NUMB exon 9 contributing to regulation of the Notch pathway in cancer. Together, these findings explain RBM10's broad RNA specificity and suggest that RBM10 functions as a splicing regulator using two RNA-binding units with different specificities to promote exon skipping.

Indexed as

AutoantigensBase SequenceBinding SitesExonsHEK293 CellsHumansProtein BindingRNA-Binding ProteinsRNA, MessengerRNA SplicingZinc FingersAutoantigensRBM10 protein, humanRNA-Binding ProteinsRNA, MessengerTNRC6A protein, human

Identifiers

PMID28379442
PMCPMC5499739
OpenAlexW2605193952

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.