Evidence map›Paper›PMID 28379007›Full record

ArticleBiochemistry2017

Avidity for Polypeptide Binding by Nucleotide-Bound Hsp104 Structures.

Clarissa L Weaver, Elizabeth C Duran, Korrie L Mack, JiaBei Lin, Meredith E Jackrel, Elizabeth A Sweeny, James Shorter, Aaron L Lucius

Abstract read
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Structural and kinetic basis for the regulation and potentiation of Hsp104 function.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  7. Article
  8. Spiraling in Control: Structures and Mechanisms of the Hsp104 Disaggregase.Cold Spring Harbor perspectives in biology · 2019
    Review
  9. Article
  10. Hydrogen exchange reveals Hsp104 architecture, structural dynamics, and energetics in physiological solution.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Clarissa L WeaverDepartment of Chemistry, University of Alabama at Birmingham , Birmingham, Alabama 35294, United States.
Elizabeth C DuranDepartment of Chemistry, University of Alabama at Birmingham , Birmingham, Alabama 35294, United States.
Korrie L MackDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania , Philadelphia, Pennsylvania 19104, United States.
JiaBei LinDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania , Philadelphia, Pennsylvania 19104, United States.
Meredith E JackrelDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania , Philadelphia, Pennsylvania 19104, United States.
Elizabeth A SweenyDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania , Philadelphia, Pennsylvania 19104, United States.
James ShorterDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania , Philadelphia, Pennsylvania 19104, United States.
Aaron L LuciusDepartment of Chemistry, University of Alabama at Birmingham , Birmingham, Alabama 35294, United States.ORCID 0000-0001-8636-5411

Funding

Defining the mechanistic basis of a prion disaggregaseR01GM099836 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SHORTER, JAMES · 2013 to 2024
$3.9M
NIGMS NIH HHS R01 GM099836
6 · The paper itself

Abstract

Recent Hsp104 structural studies have reported both planar and helical models of the hexameric structure. The conformation of Hsp104 monomers within the hexamer is affected by nucleotide ligation. After nucleotide-driven hexamer formation, Hsp104-catalyzed disruption of protein aggregates requires binding to the peptide substrate. Here, we examine the oligomeric state of Hsp104 and its peptide binding competency in the absence of nucleotide and in the presence of ADP, ATPγS, AMPPNP, or AMPPCP. Surprisingly, we found that only ATPγS facilitates avid peptide binding by Hsp104. We propose that the modulation between high- and low-peptide affinity states observed with these ATP analogues is an important component of the disaggregation mechanism of Hsp104.

Indexed as

Adenosine TriphosphateHeat-Shock ProteinsPeptidesProtein BindingSaccharomyces cerevisiae Proteinsadenosine 5'-O-(3-thiotriphosphate)Adenosine TriphosphateHeat-Shock ProteinsPeptidesSaccharomyces cerevisiae Proteins

Identifiers

PMID28379007
PMCPMC5649362

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.