Evidence map›Paper›PMID 28378014›Full record

ArticleScience advances2017

Biophysical assay for tethered signaling reactions reveals tether-controlled activity for the phosphatase SHP-1.

Jesse Goyette, Citlali Solis Salas, Nicola Coker-Gordon, Marcus Bridge, Samuel A Isaacson, Jun Allard, Omer Dushek

Abstract read
In one paragraph

Article in Science advances, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. ADP release can explain spatially-dependent kinesin binding times.bioRxiv : the preprint server for biology · 2023
    Article
  5. The optimal docking strength for reversibly tethered kinases.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Article
  7. Dephosphorylation accelerates the dissociation of ZAP70 from the T cell receptor.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jesse GoyetteSir William Dunn School of Pathology, University of Oxford, Oxford, U.K.ORCID 0000-0002-1008-1890
Citlali Solis SalasWolfson Centre for Mathematical Biology, University of Oxford, Oxford, U.K.ORCID 0000-0002-1475-1206
Nicola Coker-GordonSir William Dunn School of Pathology, University of Oxford, Oxford, U.K.
Marcus BridgeSir William Dunn School of Pathology, University of Oxford, Oxford, U.K.
Samuel A IsaacsonDepartment of Mathematics and Statistics, Boston University, Boston, MA 02215, USA.ORCID 0000-0002-7543-8619
Jun AllardDepartment of Mathematics, University of California, Irvine, Irvine, CA 92697, USA.ORCID 0000-0002-2758-4515
Omer DushekSir William Dunn School of Pathology, University of Oxford, Oxford, U.K.; Wolfson Centre for Mathematical Biology, University of Oxford, Oxford, U.K.ORCID 0000-0001-5847-5226

Funding

Wellcome Trust 098363
6 · The paper itself

Abstract

Tethered enzymatic reactions are ubiquitous in signaling networks but are poorly understood. A previously unreported mathematical analysis is established for tethered signaling reactions in surface plasmon resonance (SPR). Applying the method to the phosphatase SHP-1 interacting with a phosphorylated tether corresponding to an immune receptor cytoplasmic tail provides five biophysical/biochemical constants from a single SPR experiment: two binding rates, two catalytic rates, and a reach parameter. Tether binding increases the activity of SHP-1 by 900-fold through a binding-induced allosteric activation (20-fold) and a more significant increase in local substrate concentration (45-fold). The reach parameter indicates that this local substrate concentration is exquisitely sensitive to receptor clustering. We further show that truncation of the tether leads not only to a lower reach but also to lower binding and catalysis. This work establishes a new framework for studying tethered signaling processes and highlights the tether as a control parameter in clustered receptor signaling.

Indexed as

Models, MolecularSignal TransductionCatalysisHumansProtein DomainsProtein Tyrosine Phosphatase, Non-Receptor Type 6Protein Tyrosine Phosphatase, Non-Receptor Type 6PTPN6 protein, humanallosteric activationBiochemistryclustered receptorsenzymatic catalysismathematical modelSHP-1stochastic simulationssurface plasmon resonancetethered signallingtyrosine phosphatase

Identifiers

PMID28378014
PMCPMC5365251

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.