Evidence map›Paper›PMID 28375759›Full record

ArticleBiopreservation and biobanking2017

Baobab Laboratory Information Management System: Development of an Open-Source Laboratory Information Management System for Biobanking.

Hocine Bendou, Lunga Sizani, Tim Reid, Carmen Swanepoel, Toluwaleke Ademuyiwa, Roxana Merino-Martinez, Heimo Meuller, Akin Abayomi, Alan Christoffels

Abstract read
In one paragraph

Article in Biopreservation and biobanking, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hocine Bendou1 South African National Bioinformatics Institute, SA Medical Research Council Unit, University of the Western Cape , Bellville, South Africa .
Lunga Sizani1 South African National Bioinformatics Institute, SA Medical Research Council Unit, University of the Western Cape , Bellville, South Africa .
Tim Reid2 Bridging Biobanking and Biomolecular Research Across Europe and Africa (B3Africa) Consortium.
Carmen Swanepoel2 Bridging Biobanking and Biomolecular Research Across Europe and Africa (B3Africa) Consortium.
Toluwaleke Ademuyiwa1 South African National Bioinformatics Institute, SA Medical Research Council Unit, University of the Western Cape , Bellville, South Africa .
Roxana Merino-Martinez2 Bridging Biobanking and Biomolecular Research Across Europe and Africa (B3Africa) Consortium.
Heimo Meuller2 Bridging Biobanking and Biomolecular Research Across Europe and Africa (B3Africa) Consortium.
Akin Abayomi2 Bridging Biobanking and Biomolecular Research Across Europe and Africa (B3Africa) Consortium.
Alan Christoffels1 South African National Bioinformatics Institute, SA Medical Research Council Unit, University of the Western Cape , Bellville, South Africa .

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A laboratory information management system (LIMS) is central to the informatics infrastructure that underlies biobanking activities. To date, a wide range of commercial and open-source LIMSs are available and the decision to opt for one LIMS over another is often influenced by the needs of the biobank clients and researchers, as well as available financial resources. The Baobab LIMS was developed by customizing the Bika LIMS software ( www.bikalims.org ) to meet the requirements of biobanking best practices. The need to implement biobank standard operation procedures as well as stimulate the use of standards for biobank data representation motivated the implementation of Baobab LIMS, an open-source LIMS for Biobanking. Baobab LIMS comprises modules for biospecimen kit assembly, shipping of biospecimen kits, storage management, analysis requests, reporting, and invoicing. The Baobab LIMS is based on the Plone web-content management framework. All the system requirements for Plone are applicable to Baobab LIMS, including the need for a server with at least 8 GB RAM and 120 GB hard disk space. Baobab LIMS is a server-client-based system, whereby the end user is able to access the system securely through the internet on a standard web browser, thereby eliminating the need for standalone installations on all machines.

Indexed as

Biological Specimen BanksInformation ManagementLaboratoriesSoftwareTransportationBaobabbiobankLIMSopen sourcePlone

Identifiers

PMID28375759
PMCPMC5397207

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.