Evidence map›Paper›PMID 28375213›Full record

ArticleThe ISME journal2017

Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents.

Dimitri V Meier, Petra Pjevac, Wolfgang Bach, Stephane Hourdez, Peter R Girguis, Charles Vidoudez, Rudolf Amann, Anke Meyerdierks

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed
12.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 190 citations in OpenAlex.

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  18. mSystems · 2024
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35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Dimitri V MeierMax Planck Institute for Marine Microbiology, Bremen, Germany.
Petra PjevacMax Planck Institute for Marine Microbiology, Bremen, Germany.
Wolfgang BachDepartment of Geosciences and MARUM-Center for Marine Environmental Sciences, University of Bremen, Bremen, Germany.
Stephane HourdezCNRS, Genetics of Adaptation to Extreme Environments Group, Roscoff, France.
Peter R GirguisDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Charles VidoudezDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA.
Rudolf AmannMax Planck Institute for Marine Microbiology, Bremen, Germany.
Anke MeyerdierksMax Planck Institute for Marine Microbiology, Bremen, Germany.
Max Planck Institute for Marine Microbiology · DEHarvard University · USCentre National de la Recherche Scientifique · FRUniversity of Bremen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

At deep-sea hydrothermal vents, primary production is carried out by chemolithoautotrophic microorganisms, with the oxidation of reduced sulfur compounds being a major driver for microbial carbon fixation. Dense and highly diverse assemblies of sulfur-oxidizing bacteria (SOB) are observed, yet the principles of niche differentiation between the different SOB across geochemical gradients remain poorly understood. In this study niche differentiation of the key SOB was addressed by extensive sampling of active sulfidic vents at six different hydrothermal venting sites in the Manus Basin, off Papua New Guinea. We subjected 33 diffuse fluid and water column samples and 23 samples from surfaces of chimneys, rocks and fauna to a combined analysis of 16S rRNA gene sequences, metagenomes and real-time in situ measured geochemical parameters. We found Sulfurovum Epsilonproteobacteria mainly attached to surfaces exposed to diffuse venting, while the SUP05-clade dominated the bacterioplankton in highly diluted mixtures of vent fluids and seawater. We propose that the high diversity within Sulfurimonas- and Sulfurovum-related Epsilonproteobacteria observed in this study derives from the high variation of environmental parameters such as oxygen and sulfide concentrations across small spatial and temporal scales.

Indexed as

Carbon CycleEnvironmental MicrobiologyEpsilonproteobacteriaGenome, BacterialHydrothermal VentsMetagenomeOxidation-ReductionOxidesPhylogenyRNA, Ribosomal, 16SSeawaterSulfurSulfur CompoundsOxidesRNA, Ribosomal, 16SSulfurSulfur Compoundssulfur monoxide

Identifiers

PMID28375213
PMCPMC5520155
OpenAlexW2605119622

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.