Evidence map›Paper›PMID 28374769›Full record

ArticleScientific reports2017

XTEND: Extending the depth of field in cryo soft X-ray tomography.

Joaquín Otón, Eva Pereiro, José J Conesa, Francisco J Chichón, Daniel Luque, Javier M Rodríguez, Ana J Pérez-Berná, Carlos Oscar S Sorzano, Joanna Klukowska, Gabor T Herman and 4 more

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Review
  3. Towards a quantitative theory for transmission X-ray microscopy.Beilstein journal of nanotechnology · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Imaging cell morphology and physiology using X-rays.Biochemical Society transactions · 2019
    Review
  15. PSF correction in soft X-ray tomography.Journal of structural biology · 2018
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Joaquín OtónCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Eva PereiroALBA Synchrotron Light Source, Cerdanyola del Vallès, Barcelona, 08290, Spain.
José J ConesaCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Francisco J ChichónCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Daniel LuqueCentro Nacional de Microbiología, ISCIII, Majadahonda, Madrid, 28220, Spain.
Javier M RodríguezCentro Nacional de Microbiología, ISCIII, Majadahonda, Madrid, 28220, Spain.
Ana J Pérez-BernáALBA Synchrotron Light Source, Cerdanyola del Vallès, Barcelona, 08290, Spain.
Carlos Oscar S SorzanoCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Joanna KlukowskaDepartment of Computer Science, The Graduate Center, City University of New York, NY 10016, USA.
Gabor T HermanDepartment of Computer Science, The Graduate Center, City University of New York, NY 10016, USA.
Javier VargasCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
Roberto MarabiniEscuela Politécnica Superior, Univ. Autónoma de Madrid, Cantoblanco, Madrid, 28049, Spain.
José L CarrascosaCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.
José M CarazoCentro Nacional de Biotecnología (CNB-CSIC), Cantoblanco, Madrid, 28049, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have developed a new data collection method and processing framework in full field cryo soft X-ray tomography to computationally extend the depth of field (DOF) of a Fresnel zone plate lens. Structural features of 3D-reconstructed eukaryotic cells that are affected by DOF artifacts in standard reconstruction are now recovered. This approach, based on focal series projections, is easily applicable with closed expressions to select specific data acquisition parameters.

Indexed as

AlgorithmsImage Processing, Computer-AssistedImaging, Three-DimensionalTomography, X-Ray

Identifiers

PMID28374769
PMCPMC5379191

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.