ArticleMolecular ecology resources2017
treespace: Statistical exploration of landscapes of phylogenetic trees.
Article in Molecular ecology resources, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers, 1 of them a synthesis that pooled it.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
81 citing papers in PubMed, 1 synthesis or guideline pooled it, 188 citations in OpenAlex.
- Phylogenetic congruence, conflict and consilience between molecular and morphological data.BMC ecology and evolution · 2023Pooled it
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- Phylo-Plex: a phylogenetically informed, low-cost amplicon sequencing platform for deployable high-resolution genomic epidemiology.Nature communications · 2026Article
- Three New Mitochondrial Genomes of Neritidae (Gastropoda, Neritimorpha) From China and Insights Into Their Phylogenetic Position.Ecology and evolution · 2026Article
- A statistical framework for comparing epidemic forests.PLoS computational biology · 2026Article
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- Complete mitochondrial genome of the world's most endangered tern, Thalasseus bernsteini, and a mitogenomic phylogenetic study of the Laridae family.Scientific reports · 2025Article
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- Adaptive evolution of stress response genes in parasites aligns with host niche diversity.BMC biology · 2025Article
- Patterns of Gene Flow inEvolutionary applications · 2024Article
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- Genetic diversity, determinants, and dissemination of Burkholderia pseudomallei lineages implicated in melioidosis in Northeast Thailand.Nature communications · 2024Article
- Comparing Phylogeographies to Reveal Incompatible Geographical Histories within Genomes.Molecular biology and evolution · 2024Article
- Analyzing microbial evolution through gene and genome phylogenies.Biostatistics (Oxford, England) · 2024Article
- Energy input, habitat heterogeneity and host specificity drive avian haemosporidian diversity at continental scales.Proceedings. Biological sciences · 2024Article
- Genetic diversity, determinants, and dissemination ofbioRxiv : the preprint server for biology · 2023Article
- Structural divergence and phylogenetic relationships of Ajania (Asteraceae) from plastomes and ETS.BMC genomics · 2023Article
21 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 3 institutions in 1 country.
Funding
Abstract
The increasing availability of large genomic data sets as well as the advent of Bayesian phylogenetics facilitates the investigation of phylogenetic incongruence, which can result in the impossibility of representing phylogenetic relationships using a single tree. While sometimes considered as a nuisance, phylogenetic incongruence can also reflect meaningful biological processes as well as relevant statistical uncertainty, both of which can yield valuable insights in evolutionary studies. We introduce a new tool for investigating phylogenetic incongruence through the exploration of phylogenetic tree landscapes. Our approach, implemented in the R package treespace, combines tree metrics and multivariate analysis to provide low-dimensional representations of the topological variability in a set of trees, which can be used for identifying clusters of similar trees and group-specific consensus phylogenies. treespace also provides a user-friendly web interface for interactive data analysis and is integrated alongside existing standards for phylogenetics. It fills a gap in the current phylogenetics toolbox in R and will facilitate the investigation of phylogenetic results.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.