ArticleAlgorithms for molecular biology : AMB2017
Gerbil: a fast and memory-efficient
Article in Algorithms for molecular biology : AMB, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
15 citing papers in PubMed, 81 citations in OpenAlex.
- Swiftly identifying strongly unique k-mers.Algorithms for molecular biology : AMB · 2025Article
- MAFcounter: an efficient tool for counting the occurrences of k-mers in MAF files.BMC bioinformatics · 2025Article
- A survey of k-mer methods and applications in bioinformatics.Computational and structural biotechnology journal · 2024Review
- When less is more: sketching with minimizers in genomics.Genome biology · 2024Review
- Space-efficient computation of k-mer dictionaries for large values of k.Algorithms for molecular biology : AMB · 2024Article
- Density and Conservation Optimization of the Generalized Masked-Minimizer Sketching Scheme.Journal of computational biology : a journal of computational molecular cell biology · 2024Article
- Creating and Using Minimizer Sketches in Computational Genomics.Journal of computational biology : a journal of computational molecular cell biology · 2023Review
- Embedded-AMP: A Multi-Thread Computational Method for the Systematic Identification of Antimicrobial Peptides Embedded in Proteome Sequences.Antibiotics (Basel, Switzerland) · 2023Article
- Differentiable Learning of Sequence-Specific Minimizer Schemes with DeepMinimizer.Journal of computational biology : a journal of computational molecular cell biology · 2022Article
- Metagenomic survey of the microbiome of ancient Siberian permafrost and modern Kamchatkan cryosols.microLife · 2022Article
- Compact and evenly distributed k-mer binning for genomic sequences.Bioinformatics (Oxford, England) · 2021Article
- Sequence-specific minimizers via polar sets.Bioinformatics (Oxford, England) · 2021Article
- Estimating theCurrent genomics · 2019Article
- Article
- Accelerating metagenomic read classification on CUDA-enabled GPUs.BMC bioinformatics · 2017Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundA basic task in bioinformatics is the counting of
resultsWe present the open source
conclusionsWhile
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.