Evidence map›Paper›PMID 28373716›Full record

ArticleScientific reports2017

Microbial Functional Capacity Is Preserved Within Engineered Soil Formulations Used In Mine Site Restoration.

Deepak Kumaresan, Adam T Cross, Benjamin Moreira-Grez, Khalil Kariman, Paul Nevill, Jason Stevens, Richard J N Allcock, Anthony G O'Donnell, Kingsley W Dixon, Andrew S Whiteley

Abstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  10. Frontiers in microbiology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Deepak KumaresanUWA School of Agriculture and Environment, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
Adam T CrossSchool of Plant Biology, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
Benjamin Moreira-GrezUWA School of Agriculture and Environment, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.ORCID http://orcid.org/0000-0001-5030-5484
Khalil KarimanUWA School of Agriculture and Environment, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
Paul NevillDepartment of Environment and Agriculture, Curtin University, GPO Box U1987, Bentley, WA, 6102, Australia.
Jason StevensSchool of Plant Biology, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
Richard J N AllcockSchool of Pathology and Laboratory Medicine, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
Anthony G O'DonnellFaculty of Science, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
Kingsley W DixonSchool of Plant Biology, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia.
Andrew S WhiteleyUWA School of Agriculture and Environment, University of Western Australia, 35 Stirling Highway, Crawley, WA, 6009, Australia. andy.whiteley@uwa.edu.au.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mining of mineral resources produces substantial volumes of crushed rock based wastes that are characterised by poor physical structure and hydrology, unstable geochemistry and potentially toxic chemical conditions. Recycling of these substrates is desirable and can be achieved by blending waste with native soil to form a 'novel substrate' which may be used in future landscape restoration. However, these post-mining substrate based 'soils' are likely to contain significant abiotic constraints for both plant and microbial growth. Effective use of these novel substrates for ecosystem restoration will depend on the efficacy of stored topsoil as a potential microbial inoculum as well as the subsequent generation of key microbial soil functions originally apparent in local pristine sites. Here, using both marker gene and shotgun metagenome sequencing, we show that topsoil storage and the blending of soil and waste substrates to form planting substrates gives rise to variable bacterial and archaeal phylogenetic composition but a high degree of metabolic conservation at the community metagenome level. Our data indicates that whilst low phylogenetic conservation is apparent across substrate blends we observe high functional redundancy in relation to key soil microbial pathways, allowing the potential for functional recovery of key belowground pathways under targeted management.

Identifiers

PMID28373716
PMCPMC5428872

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.