ArticleScientific reports2017
Identification of genes related to salt stress tolerance using intron-length polymorphic markers, association mapping and virus-induced gene silencing in cotton.
Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed, 29 citations in OpenAlex.
- Molecular networks and signaling pathways governing abiotic stress tolerance in cotton: advances and perspectives.Functional & integrative genomics · 2026Review
- Development of Genome-Wide Intron Length Polymorphism (ILP) Markers in Tea Plant (International journal of molecular sciences · 2024Article
- Physiological and molecular response mechanisms of tomato seedlings to cadmium (Cd) and lead (Pb) stress.PeerJ · 2024Article
- Review
- An overview of salinity stress, mechanism of salinity tolerance and strategies for its management in cotton.Frontiers in plant science · 2022Review
- Review
- Identification of Candidate Gene-Based Markers for Girth Growth in Rubber Trees.Plants (Basel, Switzerland) · 2021Article
- Salinity Effects on Gene Expression, Morphological, and Physio-Biochemical Responses ofPlants (Basel, Switzerland) · 2021Article
- QTL controlling fiber quality traits under salt stress in upland cotton (Gossypium hirsutum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Article
- Salinity stress in cotton: effects, mechanism of tolerance and its management strategies.Physiology and molecular biology of plants : an international journal of functional plant biology · 2019Review
- Association Analysis of Salt Tolerance in Asiatic cotton (International journal of molecular sciences · 2019Article
- WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update.Nucleic acids research · 2018Article
- Identification of SNPs and Candidate Genes Associated With Salt Tolerance at the Seedling Stage in Cotton (Frontiers in plant science · 2018Article
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Authors and funding
5 authors at 1 institution in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Intron length polymorphisms (ILPs), a type of gene-based functional marker, could themselves be related to the particular traits. Here, we developed a genome-wide cotton ILPs based on orthologs annotation from two sequenced diploid species, A-genome Gossypium arboreum and D-genome G. raimondii. We identified 10,180 putative ILP markers from 5,021 orthologous genes. Among these, 535 ILP markers from 9 gene families related to stress were selected for experimental verification. Polymorphic rates were 72.71% between G. arboreum and G. raimondii and 36.45% between G. hirsutum acc. TM-1 and G. barbadense cv. Hai7124. Furthermore, 14 polymorphic ILP markers were detected in 264 G. hirsutum accessions. Coupled with previous simple sequence repeats (SSRs) evaluations and salt tolerance assays from the same individuals, we found a total of 25 marker-trait associations involved in nine ILPs. The nine genes, temporally named as C1 to C9, showed the various expressions in different organs and tissues, and five genes (C3, C4, C5, C7 and C9) were significantly upregulated after salt treatment. We verified that the five genes play important roles in salt tolerance. Particularly, silencing of C4 (encodes WRKY DNA-binding protein) and C9 (encodes Mitogen-activated protein kinase) can significantly enhance cotton susceptibility to salt stress.
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