Evidence map›Paper›PMID 28373299›Full record

ArticleGenome research2017

Integrated genomic analyses reveal frequent

Winnie S Liang, William Hendricks, Jeffrey Kiefer, Jessica Schmidt, Shobana Sekar, John Carpten, David W Craig, Jonathan Adkins, Lori Cuyugan, Zarko Manojlovic and 16 more

Open access · bronzeAbstract read
In one paragraph

Article in Genome research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 2 syntheses or guidelines pooled it, 140 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Trial
  6. Benefit of immune checkpoint inhibitors as adjuvant treatment for acral melanomas.Journal of the European Academy of Dermatology and Venereology : JEADV · 2026
    Article
  7. Article
  8. Gene fusions in melanocytic lesions: an updated comprehensive review.Journal of pathology and translational medicine · 2026
    Article
  9. Review
  10. Article
  11. Frontiers in oncology · 2026
    Article
  12. Review
  13. Article
  14. The Roles of PTEN in Melanoma Suppression.Pigment cell & melanoma research · 2025
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 7 institutions in 2 countries.

Winnie S LiangTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
William HendricksTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Jeffrey KieferTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Jessica SchmidtMayo Clinic, Scottsdale, Arizona 85259, USA.
Shobana SekarTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
John CarptenTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
David W CraigTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Jonathan AdkinsTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Lori CuyuganTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Zarko ManojlovicTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Rebecca F HalperinTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Adrienne HellandTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Sara NasserTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Christophe LegendreTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Laurence H HurleyUniversity of Arizona, College of Pharmacy, Tucson, Arizona 85721, USA.
Karthigayini SivaprakasamTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Douglas B JohnsonVanderbilt University Medical Center, Nashville, Tennessee 37232, USA.
Holly CrandallVanderbilt University Medical Center, Nashville, Tennessee 37232, USA.
Klaus J BusamMemorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Victoria ZismannTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Valerie DelucaTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Jeeyun LeeSamsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Aleksandar SekulicTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Charlotte E AriyanMemorial Sloan-Kettering Cancer Center, New York, New York 10065, USA.
Jeffrey SosmanNorthwestern University, Robert H. Lurie Comprehensive Cancer Center, Chicago, Illinois 60611, USA.
Jeffrey TrentTranslational Genomics Research Institute, Phoenix, Arizona 85004, USA.
Translational Genomics Research Institute · USMemorial Sloan Kettering Cancer Center · USVanderbilt University Medical Center · USMayo Clinic in Arizona · USNorthwestern University · USSamsung Medical Center · KRUniversity of Arizona · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Vanderbilt Clinical Oncology Research Career Development ProgramK12CA090625 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Debra L. Friedman, Paula Jill Hurley · 2001 to 2026
$16.9M
Predicting and profiling long-term survival after immune checkpoint inhibitionK23CA204726 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI JOHNSON, DOUGLAS B · 2016 to 2020
$756k
NCI NIH HHS K12 CA090625NCI NIH HHS K23 CA204726NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

Genomic analyses of cutaneous melanoma (CM) have yielded biological and therapeutic insights, but understanding of non-ultraviolet (UV)-derived CMs remains limited. Deeper analysis of acral lentiginous melanoma (ALM), a rare sun-shielded melanoma subtype associated with worse survival than CM, is needed to delineate non-UV oncogenic mechanisms. We thus performed comprehensive genomic and transcriptomic analysis of 34 ALM patients. Unlike CM, somatic alterations were dominated by structural variation and absence of UV-derived mutation signatures. Only 38% of patients demonstrated driver

Indexed as

Chromosome AberrationsMutationAdultAgedAged, 80 and overCells, CulturedFemaleGenes, Neurofibromatosis 1GTP PhosphohydrolasesHumansMaleMelanomaMembrane ProteinsMiddle Agedp21-Activated KinasesProto-Oncogene Proteins B-rafBRAF protein, humanGTP PhosphohydrolasesMembrane ProteinsNRAS protein, humanp21-Activated KinasesPAK1 protein, humanProto-Oncogene Proteins B-rafTelomeraseTERT protein, human

Identifiers

PMID28373299
PMCPMC5378171
OpenAlexW2605093443

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.