Evidence map›Paper›PMID 28373272›Full record

ArticleJournal of bacteriology2017

Novel DNA Binding and Regulatory Activities for σ

Ashley C Bono, Christine E Hartman, Sina Solaimanpour, Hao Tong, Steffen Porwollik, Michael McClelland, Jonathan G Frye, Jan Mrázek, Anna C Karls

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 21 citations in OpenAlex.

  1. ProPr54 web server: predicting σNAR genomics and bioinformatics · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. The Regulatory Functions of σInternational journal of molecular sciences · 2021
    Review
  9. A Single Nucleotide Polymorphism inFrontiers in microbiology · 2021
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Ashley C BonoDepartment of Microbiology, University of Georgia, Athens, Georgia, USA.
Christine E HartmanDepartment of Genetics, University of Georgia, Athens, Georgia, USA.
Sina SolaimanpourDepartment of Computer Science, University of Georgia, Athens, Georgia, USA.
Hao TongDepartment of Statistics, University of Georgia, Athens, Georgia, USA.
Steffen PorwollikDepartment of Microbiology and Molecular Genetics, University of California-Irvine School of Medicine, Irvine, California, USA.
Michael McClellandDepartment of Microbiology and Molecular Genetics, University of California-Irvine School of Medicine, Irvine, California, USA.
Jonathan G FryeBacterial Epidemiology and Antimicrobial Resistance Research Unit, U.S. Department of Agriculture, Athens, Georgia, USA.
Jan MrázekDepartment of Microbiology, University of Georgia, Athens, Georgia, USA.
Anna C KarlsDepartment of Microbiology, University of Georgia, Athens, Georgia, USA akarls@uga.edu.
University of Georgia · USUniversity of California, Irvine · US

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
NCI NIH HHS P30 CA062203
6 · The paper itself

Abstract

The variable sigma (σ) subunit of the bacterial RNA polymerase (RNAP) holoenzyme, which is responsible for promoter specificity and open complex formation, plays a strategic role in the response to environmental changes.

Indexed as

Gene Expression Regulation, BacterialBinding SitesDNA, BacterialGene Expression ProfilingProtein BindingRegulonRNA Polymerase Sigma 54Salmonella typhimuriumDNA, BacterialRNA Polymerase Sigma 54bEBPpromoterregulonRpoNSalmonella enterica serovar Typhimuriumσ54

Identifiers

PMID28373272
PMCPMC5446619
OpenAlexW2605075221

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.