Evidence map›Paper›PMID 28371199›Full record

ArticleAmerican journal of medical genetics. Part A2017

Nonsense pathogenic variants in exon 1 of PHOX2B lead to translational reinitiation in congenital central hypoventilation syndrome.

Jacob T Cain, Dae I Kim, Megan Quast, Winnie G Shivega, Ryan J Patrick, Chuanpit Moser, Suzanne Reuter, Myrza Perez, Angela Myers, Jill M Weimer and 2 more

Abstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Children (Basel, Switzerland) · 2026
    Article
  2. Article
  3. TheFrontiers in physiology · 2025
    Article
  4. [Two children with late-onset congenital central hypoventilation syndrome].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2023
    Article
  5. Case Report: A novelFrontiers in pediatrics · 2022
    Article
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  17. Review
  18. Carbamazepine Improves Apneic Episodes in Congenital Central Hypoventilation Syndrome (CCHS) With a NovelJournal of clinical sleep medicine : JCSM : official publication of the American Academy of Sleep Medicine · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Jacob T CainChildren's Health Research Center, Sanford Research, Sioux Falls, South Dakota.
Dae I KimChildren's Health Research Center, Sanford Research, Sioux Falls, South Dakota.
Megan QuastChildren's Health Research Center, Sanford Research, Sioux Falls, South Dakota.
Winnie G ShivegaChildren's Health Research Center, Sanford Research, Sioux Falls, South Dakota.
Ryan J PatrickChildren's Health Research Center, Sanford Research, Sioux Falls, South Dakota.
Chuanpit MoserSection of Pediatric Pulmonology, Sanford School of Medicine at the University of South Dakota, Sioux Falls, South Dakota.
Suzanne ReuterSection of Neonatal-Perinatal Medicine, Sanford School of Medicine at the University of South Dakota, Sioux Falls, South Dakota.
Myrza PerezDepartment of Pediatric Pulmonology, Kaiser Permanente, Roseville, California.
Angela MyersDepartment of Pediatrics, Sanford School of Medicine at the University of South Dakota, Sioux Falls, South Dakota.
Jill M WeimerChildren's Health Research Center, Sanford Research, Sioux Falls, South Dakota.
Kyle J RouxChildren's Health Research Center, Sanford Research, Sioux Falls, South Dakota.
Megan LandsverkChildren's Health Research Center, Sanford Research, Sioux Falls, South Dakota.ORCID http://orcid.org/0000-0002-3423-3895
Sanford Health · USUniversity of South Dakota · USKaiser Permanente Roseville Medical Center · US

Funding

Yeast 2 HybridP20GM103620 · NIGMS · SANFORD RESEARCH/USD · PI ROUX, KYLE J · 2013 to 2023
$24.2M
The Impact of PD-1 Inhibition on Immune-Response to ChemoradiotherapyP20GM103548 · NIGMS · SANFORD RESEARCH/USD · PI MISKIMINS, W KEITH · 2012 to 2020
$20.8M
NIGMS NIH HHS P20 GM103548NIGMS NIH HHS P20 GM103620
6 · The paper itself

Abstract

Pathogenic variants in PHOX2B lead to congenital central hypoventilation syndrome (CCHS), a rare disorder of the nervous system characterized by autonomic dysregulation and hypoventilation typically presenting in the neonatal period, although a milder late-onset (LO) presentation has been reported. More than 90% of cases are caused by polyalanine repeat mutations (PARMs) in the C-terminus of the protein; however non-polyalanine repeat mutations (NPARMs) have been reported. Most NPARMs are located in exon 3 of PHOX2B and result in a more severe clinical presentation including Hirschsprung disease (HSCR) and/or peripheral neuroblastic tumors (PNTs). A previously reported nonsense pathogenic variant in exon 1 of a patient with LO-CCHS and no HSCR or PNTs leads to translational reinitiation at a downstream AUG codon producing an N-terminally truncated protein. Here we report additional individuals with nonsense pathogenic variants in exon 1 of PHOX2B. In vitro analyses were used to determine if these and other reported nonsense variants in PHOX2B exon 1 produced N-terminally truncated proteins. We found that all tested nonsense variants in PHOX2B exon 1 produced a truncated protein of the same size. This truncated protein localized to the nucleus and transactivated a target promoter. These data suggest that nonsense pathogenic variants in the first exon of PHOX2B likely escape nonsense mediated decay (NMD) and produce N-terminally truncated proteins functionally distinct from those produced by the more common PARMs.

Indexed as

Protein BiosynthesisCodon, NonsenseExonsHirschsprung DiseaseHomeodomain ProteinsHumansHypoventilationMutationPeptidesPromoter Regions, GeneticRepetitive Sequences, Amino AcidSleep Apnea, CentralTranscription FactorsCodon, NonsenseHomeodomain ProteinsNBPhox proteinPeptidespolyalanineTranscription FactorsCCHSmRNA reinitiationPHOX2B

Identifiers

PMID28371199
PMCPMC5397359
OpenAlexW2599917897

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.