Evidence map›Paper›PMID 28371134›Full record

ArticleCancer medicine2017

StrandAdvantage test for early-line and advanced-stage treatment decisions in solid tumors.

Manimala Sen, Shanmukh Katragadda, Aarthi Ravichandran, Gouri Deshpande, Minothi Parulekar, Swetha Nayanala, Vikram Vittal, Weiming Shen, Melanie Phooi Nee Yong, Jemima Jacob and 23 more

Abstract read
In one paragraph

Article in Cancer medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Manimala SenFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Shanmukh KatragaddaFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Aarthi RavichandranFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Gouri DeshpandeFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Minothi ParulekarFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Swetha NayanalaFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Vikram VittalFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Weiming ShenStrand Life Sciences, 12635 E. Montview Blvd., Suite 360, Aurora, Colorado, 80045.
Melanie Phooi Nee YongStrand Life Sciences, 12635 E. Montview Blvd., Suite 360, Aurora, Colorado, 80045.
Jemima JacobFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Sravanthi ParchuruFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Kalpana DhanuskodiFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Kenneth EyringStrand Life Sciences, 12635 E. Montview Blvd., Suite 360, Aurora, Colorado, 80045.
Pooja AgrawalFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Smita AgarwalFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Ashwini ShanmugamFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Satish GuptaFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Divya VishwanathFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Kiran KumariFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Arun K HariharanFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Sai A BalajiFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Qiaoling LiangStrand Life Sciences, 12635 E. Montview Blvd., Suite 360, Aurora, Colorado, 80045.
Belen RobolledoStrand Life Sciences, 12635 E. Montview Blvd., Suite 360, Aurora, Colorado, 80045.
Vijayashree Gauribidanur RaghavendracharFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Mohammed Oomer FarooqueFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Cary J BureshProPath LLC, Dallas, Texas.
Preveen RamamoorthyStrand Life Sciences, 12635 E. Montview Blvd., Suite 360, Aurora, Colorado, 80045.
Urvashi BahadurFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Kalyanasundaram SubramanianFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Ramesh HariharanFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Vamsi VeeramachaneniFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Satish SankaranFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.
Vaijayanti GuptaFrom Strand Life Sciences, 5th Floor, Kirloskar Business Park, Bangalore, India.ORCID http://orcid.org/0000-0001-8716-5307

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Comprehensive genetic profiling of tumors using next-generation sequencing (NGS) is gaining acceptance for guiding treatment decisions in cancer care. We designed a cancer profiling test combining both deep sequencing and immunohistochemistry (IHC) of relevant cancer targets to aid therapy choices in both standard-of-care (SOC) and advanced-stage treatments for solid tumors. The SOC report is provided in a short turnaround time for four tumors, namely lung, breast, colon, and melanoma, followed by an investigational report. For other tumor types, an investigational report is provided. The NGS assay reports single-nucleotide variants (SNVs), copy number variations (CNVs), and translocations in 152 cancer-related genes. The tissue-specific IHC tests include routine and less common markers associated with drugs used in SOC settings. We describe the standardization, validation, and clinical utility of the StrandAdvantage test (SA test) using more than 250 solid tumor formalin-fixed paraffin-embedded (FFPE) samples and control cell line samples. The NGS test showed high reproducibility and accuracy of >99%. The test provided relevant clinical information for SOC treatment as well as more information related to investigational options and clinical trials for >95% of advanced-stage patients. In conclusion, the SA test comprising a robust and accurate NGS assay combined with clinically relevant IHC tests can detect somatic changes of clinical significance for strategic cancer management in all the stages.

Indexed as

Cell Line, TumorDNA Copy Number VariationsDNA, NeoplasmGenetic Association StudiesGenetic Predisposition to DiseaseHigh-Throughput Nucleotide SequencingHumansImmunohistochemistryNeoplasmsPolymorphism, Single NucleotideReproducibility of ResultsSequence Analysis, DNAStandard of CareTranslocation, GeneticDNA, NeoplasmClinical utilityimmunohistochemistrynext-generation sequencingsolid tumorsstandard-of-care therapy

Identifiers

PMID28371134
PMCPMC5430095

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.