Evidence map›Paper›PMID 28369565›Full record

ArticleMolecular biology and evolution2017

Ancient Recombination Events between Human Herpes Simplex Viruses.

Sonia Burrel, David Boutolleau, Diane Ryu, Henri Agut, Kevin Merkel, Fabian H Leendertz, Sébastien Calvignac-Spencer

Abstract read
In one paragraph

Article in Molecular biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Trial
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  6. Article
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  8. Review
  9. Article
  10. Article
  11. Alphaherpesvirus Genomics: Past, Present and Future.Current issues in molecular biology · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Protein-protein interactions of human viruses.Seminars in cell & developmental biology · 2020
    Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Sonia BurrelNational Reference Centre for Herpesviruses, Paris, France.
David BoutolleauNational Reference Centre for Herpesviruses, Paris, France.
Diane RyuRobert Koch Institut, Berlin, Germany.
Henri AgutAP-HP, University Hospital La Pitié-Salpêtrière - Charles Foix, Virology Department and Sorbonne Universités, UPMC Univ Paris 06, CR7, CIMI, INSERM U1135, Paris, France.
Kevin MerkelRobert Koch Institut, Berlin, Germany.
Fabian H LeendertzRobert Koch Institut, Berlin, Germany.
Sébastien Calvignac-SpencerRobert Koch Institut, Berlin, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herpes simplex viruses 1 and 2 (HSV-1 and HSV-2) are seen as close relatives but also unambiguously considered as evolutionary independent units. Here, we sequenced the genomes of 18 HSV-2 isolates characterized by divergent UL30 gene sequences to further elucidate the evolutionary history of this virus. Surprisingly, genome-wide recombination analyses showed that all HSV-2 genomes sequenced to date contain HSV-1 fragments. Using phylogenomic analyses, we could also show that two main HSV-2 lineages exist. One lineage is mostly restricted to subSaharan Africa whereas the other has reached a global distribution. Interestingly, only the worldwide lineage is characterized by ancient recombination events with HSV-1. Our findings highlight the complexity of HSV-2 evolution, a virus of putative zoonotic origin which later recombined with its human-adapted relative. They also suggest that coinfections with HSV-1 and 2 may have genomic and potentially functional consequences and should therefore be monitored more closely.

Indexed as

Base SequenceBiological EvolutionDNA, ViralEvolution, MolecularGenetic VariationGenomeGenome, ViralGenomicsHerpesvirus 1, HumanHerpesvirus 2, HumanPhylogenyRecombination, GeneticSequence Analysis, DNASimplexvirusDNA, Viralhuman herpes simplex virusphylogenomicsrecombination

Identifiers

PMID28369565
PMCPMC5455963

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.