Evidence map›Paper›PMID 28369540›Full record

ArticleJournal of experimental botany2017

The 2'-O-methyladenosine nucleoside modification gene OsTRM13 positively regulates salt stress tolerance in rice.

Youmei Wang, Dongqin Li, Junbao Gao, Xukai Li, Rui Zhang, Xiaohuan Jin, Zhen Hu, Bo Zheng, Staffan Persson, Peng Chen

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
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  6. Review
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  8. CRISPR/Cas9 Mediated Knockout of thePlants (Basel, Switzerland) · 2022
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  11. Computational and structural biotechnology journal · 2022
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  15. Article
  16. A Natural Variation inThe Plant cell · 2020
    Article
  17. Article
  18. G3 (Bethesda, Md.) · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Youmei WangCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Dongqin LiCollege of Life Science, HuaZhong Agricultural University, Wuhan 430070, China.
Junbao GaoCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Xukai LiCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Rui ZhangCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Xiaohuan JinCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Zhen HuCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Bo ZhengCollege of Horticulture and Forestry Sciences, HuaZhong Agricultural University, Wuhan 430070, China.
Staffan PerssonCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Peng ChenCollege of Plant Science and Technology, HuaZhong Agricultural University, Wuhan 430070, China.
Huazhong Agricultural University · CNThe University of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stress induces changes of modified nucleosides in tRNA, and these changes can influence codon-anticodon interaction and therefore the translation of target proteins. Certain nucleoside modification genes are associated with regulation of stress tolerance and immune response in plants. In this study, we found a dramatic increase of 2'-O-methyladenosine (Am) nucleoside in rice seedlings subjected to salt stress and abscisic acid (ABA) treatment. We identified LOC_Os03g61750 (OsTRM13) as a rice candidate methyltransferase for the Am modification. OsTRM13 transcript levels increased significantly upon salt stress and ABA treatment, and the OsTrm13 protein was found to be located primarily to the nucleus. More importantly, OsTRM13 overexpression plants displayed improved salt stress tolerance, and vice versa, OsTRM13 RNA interference (RNAi) plants showed reduced tolerance. Furthermore, OsTRM13 complemented a yeast trm13Δ mutant, deficient in Am synthesis, and the purified OsTrm13 protein catalysed Am nucleoside formation on tRNA-Gly-GCC in vitro. Our results show that OsTRM13, encoding a rice tRNA nucleoside methyltransferase, is an important regulator of salt stress tolerance in rice.

Indexed as

Salt ToleranceStress, PhysiologicalAbscisic AcidAdenosineOryzaPlant ProteinsRNA Interference2'-O-methyladenosineAbscisic AcidAdenosinePlant Proteins2′-O-methyladenosineABAmodified nucleosidericesalt stress tolerancetRNA.

Identifiers

PMID28369540
PMCPMC5444449
OpenAlexW2601893649

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.