ArticleGigaScience2017
Updated foxtail millet genome assembly and gene mapping of nine key agronomic traits by resequencing a RIL population.
Article in GigaScience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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Who cites it
24 citing papers in PubMed.
- Multi-omics analysis reveals the phenylalanine pathway associated with stem development under organic and compound fertilizers inFrontiers in plant science · 2026Article
- Combining QTL mapping and RNA-Seq reveals candidate genes controlling flag leaf width in foxtail millet.BMC plant biology · 2025Article
- Construction of a genetic linkage map and QTL mapping of the agronomic traits in Foxtail millet (Setaria italica).BMC genomics · 2025Article
- Genomic resources, opportunities, and prospects for accelerated improvement of millets.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Review
- Mapping of dynamic quantitative trait loci for plant height in a RIL population of foxtail millet (Frontiers in plant science · 2024Article
- Evaluation of nine statistics to identify QTLs in bulk segregant analysis using next generation sequencing approaches.BMC genomics · 2022Article
- Genome-wide identification of quantitative trait loci for morpho-agronomic and yield-related traits in foxtail millet (Setaria italica) across multi-environments.Molecular genetics and genomics : MGG · 2022Article
- QTL analysis of important agronomic traits and metabolites in foxtail millet (Frontiers in plant science · 2022Article
- Multi-omics intervention inFrontiers in plant science · 2022Review
- Revitalization of small millets for nutritional and food security by advanced genetics and genomics approaches.Frontiers in genetics · 2022Review
- Isolation and identification ofFrontiers in plant science · 2022Article
- Exploring theFrontiers in plant science · 2022Article
- Identification of QTL related to anther color and hull color by RAD sequencing in a RIL population of Setaria italica.BMC genomics · 2021Article
- High-depth resequencing of 312 accessions reveals the local adaptation of foxtail millet.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- QTL mapping for foxtail millet plant height in multi-environment using an ultra-high density bin map.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Small Millets for Enduring Food Security Amidst Pandemics.Trends in plant science · 2021Review
- Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton.BMC genomics · 2020Article
- Genomics-assisted breeding in minor and pseudo-cereals.Breeding science · 2020Article
- QTL mapping of yield component traits on bin map generated from resequencing a RIL population of foxtail millet (Setaria italica).BMC genomics · 2020Article
- Phenotypic responses of foxtail millet (Setaria italica) genotypes to phosphate supply under greenhouse and natural field conditions.PloS one · 2020Article
Corrections and comments
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Authors and funding
21 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Foxtail millet (Setaria italica) provides food and fodder in semi-arid regions and infertile land. Resequencing of 184 foxtail millet recombinant inbred lines (RILs) was carried out to aid essential research on foxtail millet improvement. A total 483 414 single nucleotide polymorphisms were determined. Bin maps were constructed based on the RILs' recombination data. Based on the high-density bin map, we updated Zhanggu reference with 416 Mb after adding 16 Mb unanchored scaffolds and Yugu reference with some assembly error correction and 3158 gaps filled. Quantitative trait loci (QTL) mapping of nine agronomic traits was done based on this RIL population, five of which were controlled by a single gene. Meanwhile, two QTLs were found for plant height, and a candidate gene showed 89% identity to the known rice gibberellin-synthesis gene sd1. Three QTLs were found for the trait of heading date. The whole genome resequencing and QTL mapping provided important tools for foxtail millet research and breeding. Resequencing of the RILs could also provide an effective way for high-quality genome assembly and gene identification.
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