ArticleGigaScience2017
The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis.
Article in GigaScience, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
9 citing papers in PubMed, 46 citations in OpenAlex.
- The de novo transcriptome of the freshwater copepod Cyclops abyssorum tatricus reveals high-elevation adaptation.Scientific reports · 2026Article
- Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.Microbiome · 2022Article
- PathogenicmSystems · 2021Article
- The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments.BMC genomics · 2021Article
- First annotated draft genomes of nonmarine ostracods (Ostracoda, Crustacea) with different reproductive modes.G3 (Bethesda, Md.) · 2021Article
- First De Novo Transcriptome of the CopepodBiology · 2020Article
- Article
- Noncanonical GA and GG 5' Intron Donor Splice Sites Are Common in the CopepodG3 (Bethesda, Md.) · 2017Article
- The genome of the Antarctic-endemic copepod, Tigriopus kingsejongensis.GigaScience · 2017Article
Corrections and comments
- Erratum issued
Authors and funding
11 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Background: The Antarctic intertidal zone is continuously subjected to extremely fluctuating biotic and abiotic stressors. The West Antarctic Peninsula is the most rapidly warming region on Earth. Organisms living in Antarctic intertidal pools are therefore interesting for research into evolutionary adaptation to extreme environments and the effects of climate change. Findings: We report the whole genome sequence of the Antarctic-endemic harpacticoid copepod Tigriopus kingsejongensi . The 37 Gb raw DNA sequence was generated using the Illumina Miseq platform. Libraries were prepared with 65-fold coverage and a total length of 295 Mb. The final assembly consists of 48 368 contigs with an N50 contig length of 17.5 kb, and 27 823 scaffolds with an N50 contig length of 159.2 kb. A total of 12 772 coding genes were inferred using the MAKER annotation pipeline. Comparative genome analysis revealed that T. kingsejongensis -specific genes are enriched in transport and metabolism processes. Furthermore, rapidly evolving genes related to energy metabolism showed positive selection signatures. Conclusions: The T. kingsejongensis genome provides an interesting example of an evolutionary strategy for Antarctic cold adaptation, and offers new genetic insights into Antarctic intertidal biota.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.