Evidence map›Paper›PMID 28369338›Full record

ArticleGenome biology and evolution2017

Origin and Evolution of the Kiwifruit Canker Pandemic.

Honour C McCann, Li Li, Yifei Liu, Dawei Li, Hui Pan, Caihong Zhong, Erik H A Rikkerink, Matthew D Templeton, Christina Straub, Elena Colombi and 2 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
22.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 130 citations in OpenAlex.

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  13. Rapid dissemination of host metabolism-manipulating genes via integrative and conjugative elements.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  14. Occurrence ofLife (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 4 countries.

Honour C McCannNew Zealand Institute for Advanced Study, Massey University, Auckland, New Zealand.
Li LiKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Yifei LiuKey Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China.
Dawei LiKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Hui PanKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Caihong ZhongKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Erik H A RikkerinkThe New Zealand Institute for Plant and Food Research Limited, Auckland, New Zealand.
Matthew D TempletonThe New Zealand Institute for Plant and Food Research Limited, Auckland, New Zealand.
Christina StraubNew Zealand Institute for Advanced Study, Massey University, Auckland, New Zealand.
Elena ColombiNew Zealand Institute for Advanced Study, Massey University, Auckland, New Zealand.
Paul B RaineyNew Zealand Institute for Advanced Study, Massey University, Auckland, New Zealand.
Hongwen HuangKey Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.
Massey University · NZWuhan Botanical Garden · CNChinese Academy of Sciences · CNESPCI Paris · FRPlant & Food Research · NZSouth China Botanical Garden · CNUniversity of Auckland · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recurring epidemics of kiwifruit (Actinidia spp.) bleeding canker disease are caused by Pseudomonas syringae pv. actinidiae (Psa). In order to strengthen understanding of population structure, phylogeography, and evolutionary dynamics, we isolated Pseudomonas from cultivated and wild kiwifruit across six provinces in China. Based on the analysis of 80 sequenced Psa genomes, we show that China is the origin of the pandemic lineage but that strain diversity in China is confined to just a single clade. In contrast, Korea and Japan harbor strains from multiple clades. Distinct independent transmission events marked introduction of the pandemic lineage into New Zealand, Chile, Europe, Korea, and Japan. Despite high similarity within the core genome and minimal impact of within-clade recombination, we observed extensive variation even within the single clade from which the global pandemic arose.

Indexed as

PhylogeographyActinidiaChinaFruitGenetic VariationNew ZealandPandemicsPlant DiseasesPseudomonas syringaebacterial plant pathogendisease emergencegenomic epidemiologypathogen evolutionplant-microbe interactions

Identifiers

PMID28369338
PMCPMC5388287
OpenAlexW2601305032

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.