ArticleBioinformatics (Oxford, England)2017
Constructing linkage maps in the genomics era with MapDisto 2.0.
Article in Bioinformatics (Oxford, England), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.
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Who cites it
31 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Genetic bases of resistance to the rice hoja blanca disease deciphered by a quantitative trait locus approach.G3 (Bethesda, Md.) · 2023Pooled it
- A candidate gene marker at the red kidney color locus (Rk) enables the development of slow-darkening pink beans.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Global perspective on the genetic architecture of susceptibility to spot form net blotch in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Genetic analysis of a quantitative trait locus associated with resistance to the root-lesion nematode Pratylenchus neglectus in triticale.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Identification and mapping of quantitative trait loci for Fusarium head blight resistance in a synthetic hexaploid × hard red spring wheat population.The plant genome · 2025Article
- Progress and innovations of gene cloning in wheat and its close relatives.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Review
- Origin and evolution of the bread wheat D genome.Nature · 2024Article
- High resolution mapping of a novel non-transgressive hybrid susceptibility locus in barley exploited by P. teres f. maculata.BMC plant biology · 2024Article
- Methylomes as key features for predicting recombination in some plant species.Plant molecular biology · 2024Article
- Identifying physiological and genetic determinants of faba bean transpiration response to evaporative demand.Annals of botany · 2023Article
- Linked candidate genes of different functions for white mold resistance in common bean (Frontiers in plant science · 2023Article
- Article
- Host and pathogen genetics reveal an inverse gene-for-gene association in the P. teres f. maculata-barley pathosystem.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Haplotype variants of Sr46 in Aegilops tauschii, the diploid D genome progenitor of wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Long-read genome sequencing of bread wheat facilitates disease resistance gene cloning.Nature genetics · 2022Article
- Genomic Analysis and Delineation of the Tan Spot Susceptibility LocusFrontiers in plant science · 2022Article
- The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization.Frontiers in plant science · 2022Article
- Delaying or delivering: identification of novel NAM-1 alleles that delay senescence to extend wheat grain fill duration.Journal of experimental botany · 2021Article
- Physical Mapping of QTL in Four Spring Wheat Populations under Conventional and Organic Management Systems. I. Earliness.Plants (Basel, Switzerland) · 2021Article
- Mapping and validation of a major QTL for primary root length of soybean seedlings grown in hydroponic conditions.BMC genomics · 2021Article
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
motivationGenotyping by sequencing (GBS) generates datasets that are challenging to handle by current genetic mapping software with graphical interface. Geneticists need new user-friendly computer programs that can analyze GBS data on desktop computers. This requires improvements in computation efficiency, both in terms of speed and use of random-access memory (RAM).
resultsMapDisto v.2.0 is a user-friendly computer program for construction of genetic linkage maps. It includes several new major features: (i) handling of very large genotyping datasets like the ones generated by GBS; (ii) direct importation and conversion of Variant Call Format (VCF) files; (iii) detection of linkage, i.e. construction of linkage groups in case of segregation distortion; (iv) data imputation on VCF files using a new approach, called LB-Impute. Features i to iv operate through inclusion of new Java modules that are used transparently by MapDisto; (v) QTL detection via a new R/qtl graphical interface. AVAILABILITY AND IMPLEMENTATION: The program is available free of charge at mapdisto.free.fr. CONTACT: mapdisto@gmail.com. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.