Evidence map›Paper›PMID 28369059›Full record

ArticlePloS one2017

Application of visible and near-infrared spectroscopy to classification of Miscanthus species.

Xiaoli Jin, Xiaoling Chen, Liang Xiao, Chunhai Shi, Liang Chen, Bin Yu, Zili Yi, Ji Hye Yoo, Kweon Heo, Chang Yeon Yu and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 12 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

Xiaoli JinDepartment of Agronomy & The Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China.
Xiaoling ChenDepartment of Agronomy & The Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China.
Liang XiaoHunan Provincial Key Laboratory for Germplasm Innovation and Utilization of Crop, Hunan Agricultural University, Hunan Changsha, China.
Chunhai ShiDepartment of Agronomy & The Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China.
Liang ChenWuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, Hubei, China.
Bin YuWuhan Junxiu Horticultural Science and Technology Co., Ltd. Wuhan, Hubei, China.
Zili YiHunan Provincial Key Laboratory for Germplasm Innovation and Utilization of Crop, Hunan Agricultural University, Hunan Changsha, China.
Ji Hye YooKangwon National University, Chuncheon, Gangwon, South Korea.
Kweon HeoKangwon National University, Chuncheon, Gangwon, South Korea.
Chang Yeon YuKangwon National University, Chuncheon, Gangwon, South Korea.
Toshihiko YamadaField Science Center for Northern Biosphere, Hokkaido University, Sapporo, Hokkaido, Japan.
Erik J SacksDepartment of Crop Sciences, University of Illinois, Urbana-Champaign, Urbana, Illinois, United States of America.
Junhua PengLife Science and Technology Center, China National Seed Group Co., Ltd., Wuhan, Hubei, China.
Kangwon National University · KRZhejiang University · CNHunan Agricultural University · CNHokkaido University · JPUniversity of Illinois Urbana-Champaign · USWuhan Botanical Garden · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The feasibility of visible and near infrared (NIR) spectroscopy as tool to classify Miscanthus samples was explored in this study. Three types of Miscanthus plants, namely, M. sinensis, M. sacchariflorus and M. fIoridulus, were analyzed using a NIR spectrophotometer. Several classification models based on the NIR spectra data were developed using line discriminated analysis (LDA), partial least squares (PLS), least squares support vector machine regression (LSSVR), radial basis function (RBF) and neural network (NN). The principal component analysis (PCA) presented rough classification with overlapping samples, while the models of Line_LSSVR, RBF_LSSVR and RBF_NN presented almost same calibration and validation results. Due to the higher speed of Line_LSSVR than RBF_LSSVR and RBF_NN, we selected the line_LSSVR model as a representative. In our study, the model based on line_LSSVR showed higher accuracy than LDA and PLS models. The total correct classification rates of 87.79 and 96.51% were observed based on LDA and PLS model in the testing set, respectively, while the line_LSSVR showed 99.42% of total correct classification rate. Meanwhile, the lin_LSSVR model in the testing set showed correct classification rate of 100, 100 and 96.77% for M. sinensis, M. sacchariflorus and M. fIoridulus, respectively. The lin_LSSVR model assigned 99.42% of samples to the right groups, except one M. fIoridulus sample. The results demonstrated that NIR spectra combined with a preliminary morphological classification could be an effective and reliable procedure for the classification of Miscanthus species.

Indexed as

BiomassDiscriminant AnalysisLeast-Squares AnalysisModels, BiologicalNeural Networks, ComputerPoaceaePrincipal Component AnalysisSpecies SpecificitySpectroscopy, Near-InfraredSpectrum AnalysisSupport Vector Machine

Identifiers

PMID28369059
PMCPMC5378329
OpenAlexW2604131509

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.