Evidence map›Paper›PMID 28368100›Full record

ArticleACS chemical biology2017

Halogen-π Interactions in the Cytochrome P450 Active Site: Structural Insights into Human CYP2B6 Substrate Selectivity.

Manish B Shah, Jingbao Liu, Qinghai Zhang, C David Stout, James R Halpert

Abstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.8field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
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  9. Article
  10. Review
  11. Bisphenols-A Threat to the Natural Environment.Materials (Basel, Switzerland) · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Four Decades of Cytochrome P450 2B Research: From Protein Adducts to Protein Structures and Beyond.Drug metabolism and disposition: the biological fate of chemicals · 2023
    Review
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Manish B ShahSchool of Pharmacy, University of Connecticut , Storrs, Connecticut, United States.ORCID 0000-0001-8593-6446
Jingbao LiuSchool of Pharmacy, University of Connecticut , Storrs, Connecticut, United States.
Qinghai ZhangThe Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, California, United States.
C David StoutThe Department of Integrative Structural and Computational Biology, The Scripps Research Institute , La Jolla, California, United States.
James R HalpertSchool of Pharmacy, University of Connecticut , Storrs, Connecticut, United States.
University of Connecticut · USScripps Research Institute · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
STRUCTURAL BASIS OF SELECTIVE P-450 INACTIVATIONR01ES003619 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI HALPERT, JAMES R · 1985 to 2016
$6.2M
Mediating Membrane Protein Crystal Contacts by Stabilization ReagentsR01GM098538 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ZHANG, QINGHAI · 2011 to 2015
$1.8M
NIEHS NIH HHS R01 ES003619NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM098538
6 · The paper itself

Abstract

Numerous cytochrome P450 (CYP) 2B6 substrates including drugs and environmental chemicals are halogenated. To assess the role of halogen-π bonds in substrate selectivity and orientation in the active site, structures of four CYP2B6 monoterpenoid complexes were solved by X-ray crystallography. Bornyl bromide exhibited dual orientations in the active site with the predominant orientation revealing a bromine-π bond with the Phe108 side chain. Bornane demonstrated two orientations with equal occupancy; in both, the C2 atom that bears the bromine in bornyl bromide was displaced by more than 2.5 Å compared with the latter complex. The bromine in myrtenyl bromide π-bonded with Phe297 in CYP2B6, whereas the two major orientations in the active site mutant I114V exhibited bromine-π interactions with two additional residues, Phe108 and Phe115. Analysis of existing structures suggests that halogen-π interactions may be unique to the CYP2B enzymes within CYP family 2 but are also important for CYP3A enzymes.

Indexed as

Catalytic DomainBinding SitesCrystallography, X-RayCytochrome P-450 CYP2B6HalogensHumansMonoterpenesProtein BindingSubstrate SpecificityCytochrome P-450 CYP2B6HalogensMonoterpenes

Identifiers

PMID28368100
PMCPMC5748325
OpenAlexW2604885635

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.