Evidence map›Paper›PMID 28368002›Full record

ArticleNature communications2017

Macrocycle peptides delineate locked-open inhibition mechanism for microorganism phosphoglycerate mutases.

Hao Yu, Patricia Dranchak, Zhiru Li, Ryan MacArthur, Matthew S Munson, Nurjahan Mehzabeen, Nathan J Baird, Kevin P Battalie, David Ross, Scott Lovell and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Biosynthetic Strategies for Macrocyclic Peptides.Molecules (Basel, Switzerland) · 2021
    Review
  7. Article
  8. Cyclic peptides can engage a single binding pocket through highly divergent modes.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Design of a Short Thermally Stable α-Helix Embedded in a Macrocycle.Chembiochem : a European journal of chemical biology · 2018
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 2 countries.

Hao YuDepartment of Chemistry, Graduate School of Sciences, The University of Tokyo, Tokyo 113-0033, Japan.
Patricia DranchakNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, USA.
Zhiru LiDivision of Genome Biology, New England Biolabs, Ipswich, Massachusetts 01938, USA.
Ryan MacArthurNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, USA.
Matthew S MunsonNational Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA.
Nurjahan MehzabeenProton Structure Laboratory, Structural Biology Center, University of Kansas, Lawrence, Kansas 66047, USA.
Nathan J BairdNational Heart, Lung and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
Kevin P BattalieIMCA-CAT Advanced Photon Source, Argonne National Laboratory, Argonne, Illinois 60439, USA.
David RossNational Institute of Standards and Technology, Gaithersburg, Maryland 20899, USA.
Scott LovellProton Structure Laboratory, Structural Biology Center, University of Kansas, Lawrence, Kansas 66047, USA.
Clotilde K S CarlowDivision of Genome Biology, New England Biolabs, Ipswich, Massachusetts 01938, USA.
Hiroaki SugaDepartment of Chemistry, Graduate School of Sciences, The University of Tokyo, Tokyo 113-0033, Japan.
James IngleseNational Center for Advancing Translational Sciences, National Institutes of Health, Rockville, Maryland 20850, USA.
National Institute of Standards and Technology · USNational Institutes of Health · USNew England Biolabs (United States) · USThe University of Tokyo · JPUniversity of Kansas · USArgonne National Laboratory · USNational Center for Advancing Translational Sciences · USNational Heart Lung and Blood Institute · US

Funding

Protein Structure Laboratory P30GM110761 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2014 to 2018
$5.6M
Phenotypic Assay Design and Development for Rare and Neglected DiseasesZIATR000052 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI INGLESE, JAMES · 2015 to 2025
$3.7M
Ipglycermides Novel potent and selective inhibitors of parasitic phosphoglycerate mutaseZIATR000247 · NCATS · NATIONAL CENTER FOR ADVANCING TRANSLATIONAL SCIENCES · PI INGLESE, JAMES · 2016 to 2023
$2.0M
Regulating RNA function by modulating RNA folding with exogenous ligandsK22HL121113 · NHLBI · UNIVERSITY OF THE SCIENCES PHILADELPHIA · PI BAIRD, NATHAN · 2015 to 2017
$732k
NHLBI NIH HHS K22 HL121113NIGMS NIH HHS P30 GM110761
6 · The paper itself

Abstract

Glycolytic interconversion of phosphoglycerate isomers is catalysed in numerous pathogenic microorganisms by a cofactor-independent mutase (iPGM) structurally distinct from the mammalian cofactor-dependent (dPGM) isozyme. The iPGM active site dynamically assembles through substrate-triggered movement of phosphatase and transferase domains creating a solvent inaccessible cavity. Here we identify alternate ligand binding regions using nematode iPGM to select and enrich lariat-like ligands from an mRNA-display macrocyclic peptide library containing >10

Indexed as

Amino Acid SequenceAnimalsBacteriaBiocatalysisCaenorhabditis elegansCoenzymesCrystallography, X-RayCysteineEnzyme InhibitorsMacrocyclic CompoundsModels, MolecularPeptidesPhosphoglycerate MutasePhylogenyProtein ConformationStructure-Activity RelationshipCoenzymesCysteineEnzyme InhibitorsMacrocyclic CompoundsPeptidesPhosphoglycerate MutaseSulfhydryl Compounds

Identifiers

PMID28368002
PMCPMC5382265
OpenAlexW2604618525

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.