Evidence map›Paper›PMID 28367589›Full record

ArticleJournal of fluorescence2017

Persistence Length and Cooperativity Estimation of Single Stranded DNA using FCS Combined with HYDRO Program.

Seokhyun Jung, Dongkeun Lee, Sok W Kim, Soo Y Kim

Abstract read
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In one paragraph

Article in Journal of fluorescence, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Seokhyun JungDepartment of Physics, Korea Advanced Institute of Science and Technology, Daejeon, 305-701, South Korea.
Dongkeun LeeDepartment of Physics, Korea Advanced Institute of Science and Technology, Daejeon, 305-701, South Korea.
Sok W KimDepartment of Physics, University of Ulsan, Ulsan, 680-749, South Korea.
Soo Y KimDepartment of Physics, Korea Advanced Institute of Science and Technology, Daejeon, 305-701, South Korea. sykim@kaist.ac.kr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Translational diffusion properties of single-stranded DNA (ssDNA) and G-quadruplexes were studied to determine the persistence length and cooperativity of G-quadruplex formation using FCS combined with HYDRO in which wormlike chain (WLC)-based Monte Carlo simulation are implemented. The presence of a guanine instead of a thymine shortened the contour length of nucleic acids and increased the vulnerability to ion screening. For cooperativity estimation, the telomeric sequence HT

Indexed as

Computer SimulationG-QuadruplexesSoftwareDNA, Single-StrandedFluorescent DyesHumansNucleic Acid ConformationSpectrometry, FluorescenceDNA, Single-StrandedFluorescent DyesFcsG quadruplexHYDRO programSingle stranded DNATranslational diffusion

Identifiers

PMID28367589

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.