Evidence map›Paper›PMID 28366642›Full record

ArticleMolecular cell2017

Spt5 Plays Vital Roles in the Control of Sense and Antisense Transcription Elongation.

Ameet Shetty, Scott P Kallgren, Carina Demel, Kerstin C Maier, Dan Spatt, Burak H Alver, Patrick Cramer, Peter J Park, Fred Winston

Abstract read
In one paragraph

Article in Molecular cell, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

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5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ameet ShettyDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Scott P KallgrenDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.
Carina DemelDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
Kerstin C MaierDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
Dan SpattDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA.
Burak H AlverDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.
Patrick CramerDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
Peter J ParkDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, USA.
Fred WinstonDepartment of Genetics, Harvard Medical School, Boston, MA 02115, USA. Electronic address: winston@genetics.med.harvard.edu.

Funding

RESEARCH TRAINING-MEDICAL INFORMATICS 90T15LM007092 · NLM · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI Nils Gehlenborg · 1992 to 2026
$32.8M
Factors Controlling Transcription and Chromatin in YeastR37GM032967 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WINSTON, FRED M. · 2004 to 2013
$4.9M
INSERTION MUTATION SUPPRESSORS IN YEASTR01GM032967 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WINSTON, FRED M. · 1985 to 2017
$3.6M
European Research Council 693023NIGMS NIH HHS R01 GM032967NIGMS NIH HHS R37 GM032967NLM NIH HHS T15 LM007092
6 · The paper itself

Abstract

Spt5 is an essential and conserved factor that functions in transcription and co-transcriptional processes. However, many aspects of the requirement for Spt5 in transcription are poorly understood. We have analyzed the consequences of Spt5 depletion in Schizosaccharomyces pombe using four genome-wide approaches. Our results demonstrate that Spt5 is crucial for a normal rate of RNA synthesis and distribution of RNAPII over transcription units. In the absence of Spt5, RNAPII localization changes dramatically, with reduced levels and a relative accumulation over the first ∼500 bp, suggesting that Spt5 is required for transcription past a barrier. Spt5 depletion also results in widespread antisense transcription initiating within this barrier region. Deletions of this region alter the distribution of RNAPII on the sense strand, suggesting that the barrier observed after Spt5 depletion is normally a site at which Spt5 stimulates elongation. Our results reveal a global requirement for Spt5 in transcription elongation.

Indexed as

Transcription Elongation, GeneticChromosomal Proteins, Non-HistoneComputational BiologyDatabases, GeneticGene Expression Regulation, FungalGenome, FungalGenotypeMutationPhenotypePromoter Regions, GeneticRNA, AntisenseRNA, FungalRNA, MessengerRNA Polymerase IIRNA SplicingSaccharomyces cerevisiaeChromosomal Proteins, Non-HistoneRNA, AntisenseRNA, FungalRNA, MessengerRNA Polymerase IISchizosaccharomyces pombe ProteinsSpt5 protein, S pombeSPT5 transcriptional elongation factorTranscriptional Elongation Factorsantisense transcriptionconvergent antisense transcriptionSpt5transcription elongation

Identifiers

PMID28366642
PMCPMC5394798

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.