Evidence map›Paper›PMID 28365869›Full record

ArticleBrain informatics2017

Fast assembling of neuron fragments in serial 3D sections.

Hanbo Chen, Daniel Maxim Iascone, Nuno Maçarico da Costa, Ed S Lein, Tianming Liu, Hanchuan Peng

Abstract read
In one paragraph

Article in Brain informatics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hanbo ChenAllen Institute for Brain Science, Seattle, WA, USA.ORCID http://orcid.org/0000-0002-8094-1761
Daniel Maxim IasconeDepartment of Neuroscience, Columbia University, New York, NY, USA.
Nuno Maçarico da CostaAllen Institute for Brain Science, Seattle, WA, USA.
Ed S LeinAllen Institute for Brain Science, Seattle, WA, USA.
Tianming LiuCortical Architecture Imaging and Discovery Laboratory, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA.
Hanchuan PengAllen Institute for Brain Science, Seattle, WA, USA. hanchuanp@alleninstitute.org.

Funding

ADVANCED GRADUATE TRAINING PROGRAM IN NEUROBIOLOGY & BEHAVIORT32NS064928 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HENGST, ULRICH · 2010 to 2024
$3.0M
NINDS NIH HHS T32 NS064928
6 · The paper itself

Abstract

Reconstructing neurons from 3D image-stacks of serial sections of thick brain tissue is very time-consuming and often becomes a bottleneck in high-throughput brain mapping projects. We developed NeuronStitcher, a software suite for stitching non-overlapping neuron fragments reconstructed in serial 3D image sections. With its efficient algorithm and user-friendly interface, NeuronStitcher has been used successfully to reconstruct very large and complex human and mouse neurons.

Indexed as

AlignmentNeuronNeuron stitcherReconstruct morphologyStitchVaa3D

Identifiers

PMID28365869
PMCPMC5563299

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.