ArticleDatabase : the journal of biological databases and curation2017
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.
Article in Database : the journal of biological databases and curation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
13 citing papers in PubMed.
- Ten quick tips for editing Wikidata.PLoS computational biology · 2023Article
- Paying it forward: Crowdsourcing the harmonisation and linking of taxon names and biodiversity identifiers.Biodiversity data journal · 2023Article
- Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science.Clinical and translational science · 2022Review
- TAGOPSIN: collating taxa-specific gene and protein functional and structural information.BMC bioinformatics · 2021Article
- Intestinal microbiota alterations by dietary exposure to chemicals from food cooking and processing. Application of data science for risk prediction.Computational and structural biotechnology journal · 2021Review
- Article
- ChlamBase: a curated model organism database for the Chlamydia research community.Database : the journal of biological databases and curation · 2019Article
- Semalytics: a semantic analytics platform for the exploration of distributed and heterogeneous cancer data in translational research.Database : the journal of biological databases and curation · 2019Article
- GeneDB and Wikidata.Wellcome open research · 2019Article
- Combinatorial Interactions of Biotic and Abiotic Stresses in Plants and Their Molecular Mechanisms: Systems Biology Approach.Molecular biotechnology · 2018Review
- Submit a Topic Page to PLOS Computational Biology and Wikipedia.PLoS computational biology · 2018Article
- Improved strategy for the curation and classification of kinases, with broad applicability to other eukaryotic protein groups.Scientific reports · 2018Article
- WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research.Nucleic acids research · 2018Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
11 authors.
Funding
Abstract
With the advancement of genome-sequencing technologies, new genomes are being sequenced daily. Although these sequences are deposited in publicly available data warehouses, their functional and genomic annotations (beyond genes which are predicted automatically) mostly reside in the text of primary publications. Professional curators are hard at work extracting those annotations from the literature for the most studied organisms and depositing them in structured databases. However, the resources don't exist to fund the comprehensive curation of the thousands of newly sequenced organisms in this manner. Here, we describe WikiGenomes (wikigenomes.org), a web application that facilitates the consumption and curation of genomic data by the entire scientific community. WikiGenomes is based on Wikidata, an openly editable knowledge graph with the goal of aggregating published knowledge into a free and open database. WikiGenomes empowers the individual genomic researcher to contribute their expertise to the curation effort and integrates the knowledge into Wikidata, enabling it to be accessed by anyone without restriction. Database URL: www.wikigenomes.org.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.