ArticleDatabase : the journal of biological databases and curation2017
MiDAS 2.0: an ecosystem-specific taxonomy and online database for the organisms of wastewater treatment systems expanded for anaerobic digester groups.
Article in Database : the journal of biological databases and curation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.
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Who cites it
59 citing papers in PubMed.
- Bioinformatic tools for microbiome analysis: from raw sequences to biological insights.Frontiers in microbiology · 2026Review
- Activated sludge microbial community assembly: the role of influent microbial community immigration.Applied and environmental microbiology · 2024Article
- MiDAS 5: Global diversity of bacteria and archaea in anaerobic digesters.Nature communications · 2024Article
- Multivariate comparison of taxonomic, chemical and operational data from 80 different full-scale anaerobic digester-related systems.Biotechnology for biofuels and bioproducts · 2024Article
- Alginate-like exopolysaccharides extracted from different waste sludges exhibit varying physicochemical and material properties.Frontiers in microbiology · 2024Article
- A comprehensive overview of the Chloroflexota community in wastewater treatment plants worldwide.mSystems · 2023Review
- Amplicon-guided isolation and cultivation of previously uncultured microbial species from activated sludge.Applied and environmental microbiology · 2023Article
- Evolving understanding of rumen methanogen ecophysiology.Frontiers in microbiology · 2023Review
- Ecosystem-specific microbiota and microbiome databases in the era of big data.Environmental microbiome · 2022Review
- Article
- Quantification of Biologically and Chemically Bound Phosphorus in Activated Sludge from Full-Scale Plants with Biological P-Removal.Environmental science & technology · 2022Article
- MiDAS 4: A global catalogue of full-length 16S rRNA gene sequences and taxonomy for studies of bacterial communities in wastewater treatment plants.Nature communications · 2022Article
- Disentangle genus microdiversity within a complex microbial community by using a multi-distance long-read binning method: example of Candidatus Accumulibacter.Environmental microbiology · 2022Article
- Machine learning-assisted identification of bioindicators predicts medium-chain carboxylate production performance of an anaerobic mixed culture.Microbiome · 2022Article
- Dynamics of Microbial Communities in Phototrophic Polyhydroxyalkanoate Accumulating Cultures.Microorganisms · 2022Article
- "Candidatus Dechloromonas phosphoritropha" and "Ca. D. phosphorivorans", novel polyphosphate accumulating organisms abundant in wastewater treatment systems.The ISME journal · 2021Article
- Faecal microbiota transplantation from patients with depression or healthy individuals into rats modulates mood-related behaviour.Scientific reports · 2021Article
- Article
- Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants.Nature communications · 2021Article
- Evaluating the nitrogen-contaminated groundwater treatment by a denitrifying granular sludge bioreactor: effect of organic matter loading.Environmental science and pollution research international · 2021Article
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Authors and funding
8 authors.
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Abstract
Wastewater is increasingly viewed as a resource, with anaerobic digester technology being routinely implemented for biogas production. Characterising the microbial communities involved in wastewater treatment facilities and their anaerobic digesters is considered key to their optimal design and operation. Amplicon sequencing of the 16S rRNA gene allows high-throughput monitoring of these systems. The MiDAS field guide is a public resource providing amplicon sequencing protocols and an ecosystem-specific taxonomic database optimized for use with wastewater treatment facility samples. The curated taxonomy endeavours to provide a genus-level-classification for abundant phylotypes and the online field guide links this identity to published information regarding their ecology, function and distribution. This article describes the expansion of the database resources to cover the organisms of the anaerobic digester systems fed primary sludge and surplus activated sludge. The updated database includes descriptions of the abundant genus-level-taxa in influent wastewater, activated sludge and anaerobic digesters. Abundance information is also included to allow assessment of the role of emigration in the ecology of each phylotype. MiDAS is intended as a collaborative resource for the progression of research into the ecology of wastewater treatment, by providing a public repository for knowledge that is accessible to all interested in these biotechnologically important systems. Database URL: http://www.midasfieldguide.org.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.