Evidence map›Paper›PMID 28365727›Full record

ArticleDatabase : the journal of biological databases and curation2017

Curated protein information in the Saccharomyces genome database.

Sage T Hellerstedt, Robert S Nash, Shuai Weng, Kelley M Paskov, Edith D Wong, Kalpana Karra, Stacia R Engel, J Michael Cherry

Abstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. bioRxiv : the preprint server for biology · 2024
    Article
  4. Article
  5. Article
  6. Incorporation of a unified protein abundance dataset into the Saccharomyces genome database.Database : the journal of biological databases and curation · 2020
    Article
  7. RESTful API for iPTMnet: a resource for protein post-translational modification network discovery.Database : the journal of biological databases and curation · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Updated regulation curation model at the Saccharomyces Genome Database.Database : the journal of biological databases and curation · 2018
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sage T HellerstedtDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Robert S NashDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Shuai WengDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Kelley M PaskovDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Edith D WongDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Kalpana KarraDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
Stacia R EngelDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.
J Michael CherryDepartment of Genetics, Stanford University, Stanford, CA 94305, USA.

Funding

GENOMIC DATABASE FOR THE YEAST SACCHAROMYCESP41HG001315 · NHGRI · STANFORD UNIVERSITY · PI CHERRY, J. MICHAEL · 1995 to 2010
$27.1M
Genomic Resource for the Yeast SaccharomycesU41HG001315 · NHGRI · STANFORD UNIVERSITY · PI CHERRY, J. MICHAEL · 2011 to 2020
$26.4M
NHGRI NIH HHS P41 HG001315NHGRI NIH HHS U41 HG001315
6 · The paper itself

Abstract

Due to recent advancements in the production of experimental proteomic data, the Saccharomyces genome database (SGD; www.yeastgenome.org ) has been expanding our protein curation activities to make new data types available to our users. Because of broad interest in post-translational modifications (PTM) and their importance to protein function and regulation, we have recently started incorporating expertly curated PTM information on individual protein pages. Here we also present the inclusion of new abundance and protein half-life data obtained from high-throughput proteome studies. These new data types have been included with the aim to facilitate cellular biology research. Database URL: : www.yeastgenome.org.

Indexed as

Databases, ProteinGenome, FungalMolecular Sequence AnnotationProteomeSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsProteomeSaccharomyces cerevisiae Proteins

Identifiers

PMID28365727
PMCPMC5467551

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.