Evidence map›Paper›PMID 28365726›Full record

ArticleDatabase : the journal of biological databases and curation2017

Boechera microsatellite website: an online portal for species identification and determination of hybrid parentage.

Fay-Wei Li, Catherine A Rushworth, James B Beck, Michael D Windham

Open access · goldAbstract read
In one paragraph

Article in Database : the journal of biological databases and curation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 35 citations in OpenAlex.

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  12. TheFrontiers in plant science · 2019
    Review
  13. Apospory and Diplospory in DiploidFrontiers in plant science · 2019
    Article
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  17. A guide to sequence your favorite plant genomes.Applications in plant sciences · 2018
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Fay-Wei LiDepartment of Biology, Duke University, Durham, NC 27708, USA.
Catherine A RushworthDepartment of Biology, Duke University, Durham, NC 27708, USA.
James B BeckDepartment of Biological Sciences, Wichita State University, Wichita, KS 67260, USA.
Michael D WindhamDepartment of Biology, Duke University, Durham, NC 27708, USA.
Duke University · USBotanical Research Institute of Texas · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Boechera (Brassicaceae) has many features to recommend it as a model genus for ecological and evolutionary research, including species richness, ecological diversity, experimental tractability and close phylogenetic proximity to Arabidopsis . However, efforts to realize the full potential of this model system have been thwarted by the frequent inability of researchers to identify their samples and place them in a broader evolutionary context. Here we present the Boechera Microsatellite Website (BMW), a portal that archives over 55 000 microsatellite allele calls from 4471 specimens (including 133 nomenclatural types). The portal includes analytical tools that utilize data from 15 microsatellite loci as a highly effective DNA barcoding system. The BMW facilitates the accurate identification of Boechera samples and the investigation of reticulate evolution among the ±83 sexual diploid taxa in the genus, thereby greatly enhancing Boechera 's potential as a model system. Database URL: http://sites.biology.duke.edu/windhamlab/.

Indexed as

DNA Barcoding, TaxonomicInternetMicrosatellite RepeatsSequence Analysis, DNAAllelesArabidopsisDNA, PlantEvolution, MolecularDNA, Plant

Identifiers

PMID28365726
PMCPMC5467466
OpenAlexW2604447012

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.