Evidence map›Paper›PMID 28365230›Full record

ArticleEBioMedicine2017

Mutational Correlates of Virological Failure in Individuals Receiving a WHO-Recommended Tenofovir-Containing First-Line Regimen: An International Collaboration.

Soo-Yon Rhee, Vici Varghese, Susan P Holmes, Gert U Van Zyl, Kim Steegen, Mark A Boyd, David A Cooper, Sabin Nsanzimana, Shanmugam Saravanan, Charlotte Charpentier and 32 more

Open access · goldAbstract read
In one paragraph

Article in EBioMedicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 2 pooled it
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 2 syntheses or guidelines pooled it, 50 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Trends in the Molecular Epidemiology and Genetic Mechanisms of Transmitted Human Immunodeficiency Virus Type 1 Drug Resistance in a Large US Clinic Population.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors at 20 institutions in 18 countries.

Soo-Yon RheeDepartment of Medicine, Stanford University, Stanford, CA 94305, USA. Electronic address: syrhee@stanford.edu.
Vici VargheseDepartment of Medicine, Stanford University, Stanford, CA 94305, USA.
Susan P HolmesDepartment of Statistics, Stanford University, Stanford, CA 94305, USA.
Gert U Van ZylDivision of Medical Virology, Stellenbosch University, National Health Laboratory Service, Tygerberg 7505, South Africa.
Kim SteegenDepartment of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050, South Africa.
Mark A BoydThe Kirby Institute, UNSW, Sydney, NSW 2052, Australia.
David A CooperThe Kirby Institute, UNSW, Sydney, NSW 2052, Australia.
Sabin NsanzimanaHIV/AIDS Division, Rwanda Biomedical Center, Kigali, P.O. Box 87, Rwanda.
Shanmugam SaravananY.R. Gaitonde Centre for AIDS Research and Education, Voluntary Health Services, Taramani, Chennai 600113, India.
Charlotte CharpentierUniv Paris Diderot, Sorbonne Paris Cité, IAME, UMR 1137, INSERM, F-75018 Paris, France; AP-HP, Hôpital Bichat-Claude Bernard, Laboratoire de Virologie, F-75018 Paris, France.
Tulio de OliveiraCollege of Health Sciences, University of KwaZulu-Natal, Durban 4041, South Africa.
Mary-Ann A EtiebetInstitute of Human Virology, University of Maryland School of Medicine, MD 21201, USA.
Federico GarciaHospital Universitario San Cecilio, 18012 Granada, Spain.
Dominique GoedhalsDepartment of Medical Microbiology and Virology, National Health Laboratory Service/University of the Free State, Bloemfontein 9301,South Africa.
Perpetua GomesLaboratorio de Virologia, Hospital de Egas Moniz, Centro Hospitalar de Lisboa Ocidental, Lisbon 1449-005, Portugal.
Huldrych F GünthardUniversity Hospital Zurich, Institute of Medical Virology, University of Zurich, 8091 Zurich, Switzerland.
Raph L HamersAmsterdam Institute for Global Health and Development, Department of Global Health, Academic Medical Center, University of Amsterdam, Amsterdam, P.O. Box 22700, The Netherlands.
Christopher J HoffmannJohns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Gillian HuntNational Institute for Communicable Diseases, Sandringham, Johannesburg 2131, South Africa.
Awachana JiamsakulThe Kirby Institute, UNSW, Sydney, NSW 2052, Australia.
Pontiano KaleebuUganda Virus Research Institute, Entebbe, P.O. Box 49, Uganda.
Phyllis KankiHarvard T. H. Chan School of Public Health, Boston, MA 02115, USA.
Rami KantorDivision of Infectious Diseases, Alpert Medical School, Brown University, Providence, RI 02903, USA.
Bernhard KerschbergerMédecins sans Frontières, Mbabane, H100, Swaziland.
Vincent C MarconiEmory University School of Medicine, Rollins School of Public Health, Emory University, Atlanta, GA 30322, USA.
Jean D'amour NdahimanaHIV/AIDS Division, Rwanda Biomedical Center, Kigali, P.O. Box 87, Rwanda.
Nicaise NdembiInstitute of Human Virology Nigeria, Abuja, Federal Capital Territory, P.O. Box 9396, Nigeria.
Nicole Ngo-Giang-HuongInstitut de Recherche pour le Developpement (IRD), UMI 174 - PHPT, 13572 Marseilles, France.
Casper RokxDepartment of Internal Medicine and Infectious Diseases, Erasmus University Medical Center, 3000 CA Rotterdam, The Netherlands.
Maria M SantoroUniversity of Rome Tor Vergata, 00173 Rome, Italy.
Jonathan M SchapiroNational Hemophilia Center, Sheba Medical Center, Tel Aviv 5262000, Israel.
Daniel SchmidtDepartment of Infectious Disease Epidemiology, HIV/AIDS, STI and Blood Born Infections, Robert Koch-Institute, 13353 Berlin, Germany.
Lillian SeuSchool of Medicine, University of Alabama at Birmingham, AL 35210, USA.
Kim C E SigaloffAmsterdam Institute for Global Health and Development, Department of Global Health, Academic Medical Center, University of Amsterdam, Amsterdam, P.O. Box 22700, The Netherlands.
Sunee SirivichayakulFaculty of Medicine, Chulalongkorn University, Bangkok 10330, Thailand.
Lindiwe SkhosanaDepartment of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050, South Africa.
Henry SunpathSchool of Clinical Sciences, University of KwaZulu- Natal, Durban 4041, South Africa.
Michele TangDepartment of Medicine, Stanford University, Stanford, CA 94305, USA.
Chunfu YangDivision of Global HIV/AIDS, Center for Global Health, Centers for Disease Control and Prevention, Port-au-Prince, Haiti.
Sergio CarmonaDepartment of Molecular Medicine and Haematology, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, WITS 2050, South Africa.
Ravindra K GuptaUCL, Department of Infection, London WC1E 6BT, UK.
Robert W ShaferDepartment of Medicine, Stanford University, Stanford, CA 94305, USA.
Stanford University · USUniversity of the Witwatersrand · ZAUNSW Sydney · AUAmsterdam UMC Location University of Amsterdam · NLNational Health Laboratory Service · ZARwanda Biomedical Center · RWUniversity of KwaZulu-Natal · ZABrown University · USChulalongkorn University · THEmory University · USErasmus MC · NLGheskio Centers · HTHarvard University · USHospital de Egas Moniz · PTInstitut de Recherche pour le Développement · FRInstitute of Human Virology · NGInstituto de Investigación Biosanitaria de Granada · ESJohns Hopkins University · USMédecins Sans Frontières · UGNational Institute for Communicable Diseases

Funding

AIDS Clinical Trials Group NetworkU01AI068636 · NIAID · SOCIAL AND SCIENTIFIC SYSTEMS, INC. · PI KURITZKES, DANIEL R. · 2006 to 2010
$147.1M
Translational ScienceP30AI042853 · NIAID · MIRIAM HOSPITAL · PI LARRY K BROWN · 1998 to 2026
$51.7M
Fogarty International Clinical Research Scholars Support Center @ Vanderbilt-AAMCR24TW007988 · FIC · VANDERBILT UNIVERSITY · PI VERMUND, STEN H. · 2007 to 2011
$27.6M
PUBLIC HIV DRUG RESISTANCE DATABASER01AI068581 · NIAID · STANFORD UNIVERSITY · PI SHAFER, ROBERT WILLIAM · 2006 to 2017
$6.2M
Optimizing HIV Treatment Monitoring under Resource ConstraintsR01AI108441 · NIAID · BROWN UNIVERSITY · PI HOGAN, JOSEPH W, KANTOR, RAMI · 2015 to 2019
$3.5M
FIC NIH HHS R24 TW007988NIAID NIH HHS P30 AI042853NIAID NIH HHS R01 AI068581NIAID NIH HHS R01 AI108441NIAID NIH HHS U01 AI068636
6 · The paper itself

Abstract

Tenofovir disoproxil fumarate (TDF) genotypic resistance defined by K65R/N and/or K70E/Q/G occurs in 20% to 60% of individuals with virological failure (VF) on a WHO-recommended TDF-containing first-line regimen. However, the full spectrum of reverse transcriptase (RT) mutations selected in individuals with VF on such a regimen is not known. To identify TDF regimen-associated mutations (TRAMs), we compared the proportion of each RT mutation in 2873 individuals with VF on a WHO-recommended first-line TDF-containing regimen to its proportion in a cohort of 50,803 antiretroviral-naïve individuals. To identify TRAMs specifically associated with TDF-selection pressure, we compared the proportion of each TRAM to its proportion in a cohort of 5805 individuals with VF on a first-line thymidine analog-containing regimen. We identified 83 TRAMs including 33 NRTI-associated, 40 NNRTI-associated, and 10 uncommon mutations of uncertain provenance. Of the 33 NRTI-associated TRAMs, 12 - A62V, K65R/N, S68G/N/D, K70E/Q/T, L74I, V75L, and Y115F - were more common among individuals receiving a first-line TDF-containing compared to a first-line thymidine analog-containing regimen. These 12 TDF-selected TRAMs will be important for monitoring TDF-associated transmitted drug-resistance and for determining the extent of reduced TDF susceptibility in individuals with VF on a TDF-containing regimen.

Indexed as

Drug Resistance, ViralGenotypeHIV-1HIV InfectionsHIV Reverse TranscriptaseHumansMutationPrevalenceReverse Transcriptase InhibitorsTenofovirTreatment FailureViral LoadWorld Health OrganizationHIV Reverse Transcriptasereverse transcriptase, Human immunodeficiency virus 1Reverse Transcriptase InhibitorsTenofovirAntiretroviral therapyDrug resistanceHIV-1Reverse transcriptaseTenofovirWHO-recommended first-line

Identifiers

PMID28365230
PMCPMC5405160
OpenAlexW2597188827

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.