Evidence map›Paper›PMID 28364265›Full record

ArticleTropical animal health and production2017

Molecular characterization and SNP identification in HSPB6 gene in Karan Fries (Bos taurus x Bos indicus) cattle.

Rakesh Kumar, I D Gupta, Archana Verma, Ragini Kumari, Nishant Verma

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Article in Tropical animal health and production, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Rakesh KumarRegional Research Station (Punjab Agricultural University), Ballowal Saunkhri, SBS, Nagar, 144 521, India. rakesh05vet@gmail.com.
I D GuptaAnimal Genetics and Breeding Division, ICAR-NDRI, Karnal, 132001, India.
Archana VermaAnimal Genetics and Breeding Division, ICAR-NDRI, Karnal, 132001, India.
Ragini KumariAnimal Genetics and Breeding Division, ICAR-NDRI, Karnal, 132001, India.
Nishant VermaAnimal Genetics and Breeding Division, ICAR-NDRI, Karnal, 132001, India.
Indian Council of Agricultural Research · INPunjab Agricultural University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heat shock proteins (HSPs) act as molecular chaperones which are preferentially transcribed in response to severe perturbations of the cellular homeostasis such as heat stress. The present study was undertaken for molecular characterization and detection of genetic polymorphisms of HSPB6 gene in 100 Karan Fries Cattle. HSPB6 gene was mapped on Bos taurus autosome 18 (BTA 18), comprising three exons and two introns. Four sets of primers for HSPB6 gene were designed using Primer3 software (version 0.4.0). For detecting single nucleotide polymorphisms (SNPs), sequence data was analyzed using BioEdit software (version 7.2). Comparative sequence analysis of HSPB6 gene showed five nucleotide polymorphisms, which included three transitions viz. g.161A > G, g.436G > A and g.2152A > G and two transversions viz. g.1743C > G and g.2417A > T compared to B. taurus (NCBI GenBank: AC_000175.1). HSPB6 gene of Karan Fries cattle exhibited a high percentage of nucleotide identity (47.0-100.0%) with the corresponding mammalian homologue. The present study indicated a high degree of genetic variability in the HSPB6 gene in the Karan Fries cattle populations.

Indexed as

Polymorphism, Single NucleotideAnimalsCattleHSP20 Heat-Shock ProteinsHybridization, GeneticPhylogenySequence Analysis, DNAHSP20 Heat-Shock ProteinsHSPB6Karan Fries cattleMolecular characterizationSNPs

Identifiers

PMID28364265
OpenAlexW2599036450

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.