Evidence map›Paper›PMID 28364020›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2017

Facilitated dissociation of transcription factors from single DNA binding sites.

Ramsey I Kamar, Edward J Banigan, Aykut Erbas, Rebecca D Giuntoli, Monica Olvera de la Cruz, Reid C Johnson, John F Marko

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 91 citations in OpenAlex.

  1. Article
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  6. TDP-43 controls RNA structure through high affinity lattice interactions.bioRxiv : the preprint server for biology · 2025
    Article
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  14. The mechanism of mRNA activation.bioRxiv : the preprint server for biology · 2023
    Article
  15. Article
  16. Article
  17. IHF and Fis asInternational journal of molecular sciences · 2023
    Review
  18. Multiple RNA- and DNA-binding proteins exhibit direct transfer of polynucleotides with implications for target-site search.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ramsey I KamarDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208.
Edward J BaniganDepartment of Physics and Astronomy, Northwestern University, Evanston, IL 60208.
Aykut ErbasDepartment of Materials Science and Engineering, Northwestern University, Evanston, IL 60208.
Rebecca D GiuntoliDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208.
Monica Olvera de la CruzDepartment of Physics and Astronomy, Northwestern University, Evanston, IL 60208; m-olvera@northwestern.edu john-marko@northwestern.edu.
Reid C JohnsonDepartment of Biological Chemistry, David Geffen School of Medicine at the University of California, Los Angeles, CA 90095.
John F MarkoDepartment of Molecular Biosciences, Northwestern University, Evanston, IL 60208; m-olvera@northwestern.edu john-marko@northwestern.edu.
Northwestern University · USUniversity of California, Los Angeles · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LEONIDAS C. PLATANIAS · 1993 to 2026
$153.9M
Center for 3D Structure and Physics of the GenomeU54DK107980 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI DEKKER, JOB · 2015 to 2019
$14.9M
Spatio-Temporal Organization of Chromatin and Information Transfer in CancerU54CA193419 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LICHT, JONATHAN D., O'HALLORAN, THOMAS V · 2015 to 2020
$10.4M
Molecular Analysis of Site Specific DNA RecombinationR37GM038509 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JOHNSON, REID C · 2005 to 2014
$6.6M
MOLECULAR ANALYSIS OF SITE-SPECIFIC DNA RECOMBINATIONR01GM038509 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JOHNSON, REID C · 1987 to 2018
$4.7M
Activities of nucleoprotein complexes visualized in single-molecule experimentsR01GM105847 · NIGMS · NORTHWESTERN UNIVERSITY · PI MARKO, JOHN F · 2013 to 2025
$2.5M
NCI NIH HHS U54 CA193419NIDDK NIH HHS U54 DK107980NIGMS NIH HHS R01 GM038509NIGMS NIH HHS R01 GM105847NIGMS NIH HHS R37 GM038509
6 · The paper itself

Abstract

The binding of transcription factors (TFs) to DNA controls most aspects of cellular function, making the understanding of their binding kinetics imperative. The standard description of bimolecular interactions posits that TF off rates are independent of TF concentration in solution. However, recent observations have revealed that proteins in solution can accelerate the dissociation of DNA-bound proteins. To study the molecular basis of facilitated dissociation (FD), we have used single-molecule imaging to measure dissociation kinetics of Fis, a key

Indexed as

Binding SitesDNA, FungalHMGN ProteinsKineticsMitochondrial ProteinsProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsDNA, FungalFIS1 protein, S cerevisiaeHMGN ProteinsMitochondrial ProteinsNHP6A protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factorsbiomolecule bindingchemical kineticsDNA–protein interactionsfacilitated dissociationtranscription factor

Identifiers

PMID28364020
PMCPMC5402408
OpenAlexW2952537845

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.