Evidence map›Paper›PMID 28362814›Full record

ArticlePloS one2017

Atypical protein disulfide isomerases (PDI): Comparison of the molecular and catalytic properties of poplar PDI-A and PDI-M with PDI-L1A.

Benjamin Selles, Flavien Zannini, Jérémy Couturier, Jean-Pierre Jacquot, Nicolas Rouhier

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  7. MitochondrialAntioxidants (Basel, Switzerland) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Benjamin SellesUMR 1136 Interactions Arbres/Microorganismes, Université de Lorraine/ INRA, Faculté des Sciences et Technologies, Vandoeuvre-lès-Nancy, France.
Flavien ZanniniUMR 1136 Interactions Arbres/Microorganismes, Université de Lorraine/ INRA, Faculté des Sciences et Technologies, Vandoeuvre-lès-Nancy, France.
Jérémy CouturierUMR 1136 Interactions Arbres/Microorganismes, Université de Lorraine/ INRA, Faculté des Sciences et Technologies, Vandoeuvre-lès-Nancy, France.
Jean-Pierre JacquotUMR 1136 Interactions Arbres/Microorganismes, Université de Lorraine/ INRA, Faculté des Sciences et Technologies, Vandoeuvre-lès-Nancy, France.
Nicolas RouhierUMR 1136 Interactions Arbres/Microorganismes, Université de Lorraine/ INRA, Faculté des Sciences et Technologies, Vandoeuvre-lès-Nancy, France.ORCID http://orcid.org/0000-0002-2036-7884
Interactions Arbres-Microorganismes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Protein disulfide isomerases are overwhelmingly multi-modular redox catalysts able to perform the formation, reduction or isomerisation of disulfide bonds. We present here the biochemical characterization of three different poplar PDI isoforms. PDI-A is characterized by a single catalytic Trx module, the so-called a domain, whereas PDI-L1a and PDI-M display an a-b-b'-a' and a°-a-b organisation respectively. Their activities have been tested in vitro using purified recombinant proteins and a series of model substrates as insulin, NADPH thioredoxin reductase, NADP malate dehydrogenase (NADP-MDH), peroxiredoxins or RNase A. We demonstrated that PDI-A exhibited none of the usually reported activities, although the cysteines of the WCKHC active site signature are able to form a disulfide with a redox midpoint potential of -170 mV at pH 7.0. The fact that it is able to bind a [Fe2S2] cluster upon Escherichia coli expression and anaerobic purification might indicate that it does not have a function in dithiol-disulfide exchange reactions. The two other proteins were able to catalyze oxidation or reduction reactions, PDI-L1a being more efficient in most cases, except that it was unable to activate the non-physiological substrate NADP-MDH, in contrast to PDI-M. To further evaluate the contribution of the catalytic domains of PDI-M, the dicysteinic motifs have been independently mutated in each a domain. The results indicated that the two a domains seem interconnected and that the a° module preferentially catalyzed oxidation reactions whereas the a module catalyzed reduction reactions, in line with the respective redox potentials of -170 mV and -190 mV at pH 7.0. Overall, these in vitro results illustrate that the number and position of a and b domains influence the redox properties and substrate recognition (both electron donors and acceptors) of PDI which contributes to understand why this protein family expanded along evolution.

Indexed as

Amino Acid SequenceCatalysisDithionitrobenzoic AcidHumansHydrogen-Ion ConcentrationInsulinIronMalate Dehydrogenase (NADP+)Mutagenesis, Site-DirectedOxidoreductasesPeroxiredoxinsProtein Disulfide-IsomerasesProtein IsoformsSequence Homology, Amino AcidSulfidesThioredoxin-Disulfide ReductaseDithionitrobenzoic AcidInsulinIronMalate Dehydrogenase (NADP+)OxidoreductasesPeroxiredoxinsProtein Disulfide-IsomerasesProtein IsoformsSulfidesThioredoxin-Disulfide Reductase

Identifiers

PMID28362814
PMCPMC5375154
OpenAlexW2602143622

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.