Evidence map›Paper›PMID 28361105›Full record

ArticleMolecular genetics & genomic medicine2017

Single-nucleotide substitution T to A in the polypyrimidine stretch at the splice acceptor site of intron 9 causes exon 10 skipping in the

Hideo Sasai, Yuka Aoyama, Hiroki Otsuka, Elsayed Abdelkreem, Mina Nakama, Tomohiro Hori, Hidenori Ohnishi, Lesley Turner, Toshiyuki Fukao

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Hideo SasaiDepartment of Pediatrics Graduate School of Medicine Gifu University Gifu Japan.ORCID 0000-0001-7704-6259
Yuka AoyamaDepartment of PediatricsGraduate School of MedicineGifu UniversityGifuJapan; Department of Biomedical SciencesCollege of Life and Health SciencesChubu UniversityKasugaiJapan.
Hiroki OtsukaDepartment of Pediatrics Graduate School of Medicine Gifu University Gifu Japan.
Elsayed AbdelkreemDepartment of PediatricsGraduate School of MedicineGifu UniversityGifuJapan; Department of PediatricsFaculty of MedicineSohag UniversitySohagEgypt.
Mina NakamaDivision of Clinical Genetics Gifu University Hospital Gifu Japan.
Tomohiro HoriDepartment of Pediatrics Graduate School of Medicine Gifu University Gifu Japan.
Hidenori OhnishiDepartment of Pediatrics Graduate School of Medicine Gifu University Gifu Japan.
Lesley TurnerDiscipline of Genetics Memorial University of Newfoundland St John's NF Canada.
Toshiyuki FukaoDepartment of PediatricsGraduate School of MedicineGifu UniversityGifuJapan; Division of Clinical GeneticsGifu University HospitalGifuJapan.
Gifu University · JPGifu University Hospital · JPChubu University · JPMemorial University of Newfoundland · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundβ-ketothiolase (T2, gene symbol

methodscDNA analysis was performed using GK03's fibroblasts treated with/without cycloheximide (CHX), since exon 10 skipping caused a frameshift and nonsense-mediated mRNA decay (NMD). Minigene splicing experiment was done to confirm aberrant splicing.

resultscDNA analysis using fibroblasts cultured with cycloheximide indeed showed the occurrence of exon 10 skipping. A minigene splicing experiment clearly showed that the c.941-9T>A mutant resulted in transcripts with exon 10 skipping. There are few reports describing that single-nucleotide substitutions in polypyrimidine stretches of splice acceptor sites cause aberrant splicing.

conclusionWe showed that c.941-9T>A induces aberrant splicing in the

Indexed as

ACAT1exon skippingmitochondrial acetoacetyl‐CoA thiolase deficiencypolypyrimidine stretchsplice acceptor siteT2 deficiency

Identifiers

PMID28361105
PMCPMC5370231
OpenAlexW2587382015

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.