Evidence map›Paper›PMID 28361008›Full record

ArticleEurographics Workshop on Visual Computing for Biomedicine2016

Chameleon: Dynamic Color Mapping for Multi-Scale Structural Biology Models.

Nicholas Waldin, Mathieu Le Muzic, Manuela Waldner, Eduard Gröller, David Goodsell, Autin Ludovic, Ivan Viola

Abstract read
In one paragraph

Article in Eurographics Workshop on Visual Computing for Biomedicine, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. A Concise Review of Biomolecule Visualization.Current issues in molecular biology · 2024
    Review
  3. Review
  4. Cuttlefish: Color Mapping for Dynamic Multi-Scale Visualizations.Computer graphics forum : journal of the European Association for Computer Graphics · 2019
    Article
  5. Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments.IEEE transactions on visualization and computer graphics · 2019
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nicholas WaldinTU Wien.
Mathieu Le MuzicTU Wien.
Manuela WaldnerTU Wien.
Eduard GröllerTU Wien; VRVis.
David GoodsellScripps Research Institute.
Autin LudovicScripps Research Institute.
Ivan ViolaTU Wien.

Funding

National Biomedical Computation Resource - Competitive Revision SupplementP41GM103426 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI AMARO, ROMMIE E · 2012 to 2019
$14.0M
NIGMS NIH HHS P41 GM103426
6 · The paper itself

Abstract

Visualization of structural biology data uses color to categorize or separate dense structures into particular semantic units. In multiscale models of viruses or bacteria, there are atoms on the finest level of detail, then amino-acids, secondary structures, macromolecules, up to the compartment level and, in all these levels, elements can be visually distinguished by color. However, currently only single scale coloring schemes are utilized that show information for one particular scale only. We present a novel technology which adaptively, based on the current scale level, adjusts the color scheme to depict or distinguish the currently best visible structural information. We treat the color as a visual resource that is distributed given a particular demand. The changes of the color scheme are seamlessly interpolated between the color scheme from the previous views into a given new one. With such dynamic multi-scale color mapping we ensure that the viewer is able to distinguish structural detail that is shown on any given scale. This technique has been tested by users with an expertise in structural biology and has been overall well received.

Indexed as

Categories and Subject Descriptors (according to ACM CCS): Visualization [Human-centered computing]: Visualization application domainsScientific visualization

Identifiers

PMID28361008
PMCPMC5370176

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.