Evidence map›Paper›PMID 28359328›Full record

ArticleBMC research notes2017

Stem loop-mediated isothermal amplification test: comparative analysis with classical LAMP and PCR in detection of Entamoeba histolytica in Kenya.

Fridah Mwendwa, Cecilia K Mbae, Johnson Kinyua, Erastus Mulinge, Gitonga Nkanata Mburugu, Zablon K Njiru

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC research notes, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Food and waterborne parasitology · 2021
    Article
  6. Article
  7. Review
  8. Update on laboratory diagnosis of amoebiasis.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019
    Review
  9. First report ofTropical diseases, travel medicine and vaccines · 2019
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Fridah MwendwaInstitute of Tropical Medicine and Infectious Diseases, Jomo Kenyatta University of Agriculture and Technology, P.O Box 62000-0200, Nairobi, Kenya. fridahmwendwa.fm@gmail.com.ORCID http://orcid.org/0000-0002-8358-5037
Cecilia K MbaeCentre for Microbiology Research, Kenya Medical Research Institute, P.O Box 19464-00202, Nairobi, Kenya.
Johnson KinyuaDepartment of Biochemistry, Jomo Kenyatta University of Agriculture and Technology, P.O Box 62000-0200, Nairobi, Kenya.
Erastus MulingeCentre for Microbiology Research, Kenya Medical Research Institute, P.O Box 19464-00202, Nairobi, Kenya.
Gitonga Nkanata MburuguMeru University of Science and Technology, P. O. Box 972-60200, Meru, Kenya.
Zablon K NjiruMeru University of Science and Technology, P. O. Box 972-60200, Meru, Kenya.
Jomo Kenyatta University of Agriculture and Technology · KEKenya Medical Research Institute · KEMeru University of Science and Technology · KEMurdoch University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEntamoeba histolytica, the causative agent for amoebiasis is a considerable burden to population in the developing countries where it accounts for over 50 million infections. The tools for detection of amoebiasis are inadequate and diagnosis relies on microscopy which means a significant percent of cases remain undiagnosed. Moreover, tests formats that can be rapidly applied in rural endemic areas are not available.

methodsIn this study, a loop-mediated isothermal test (LAMP) based on 18S small subunit ribosomal RNA gene was designed with extra reaction accelerating primers (stem primers) and compared with the published LAMP and PCR tests in detection of E. histolytica DNA in clinical samples.

resultsThe stem LAMP test indicated shorter time to results by an average 11 min and analytical sensitivity of 10

conclusionThe stem LAMP test developed in this study indicates potential towards detection of E. histolytica.

Indexed as

Base SequenceChildDNA PrimersDNA, ProtozoanEntamoeba histolyticaEntamoebiasisFecesHost-Parasite InteractionsHumansKenyaNucleic Acid Amplification TechniquesPolymerase Chain ReactionReproducibility of ResultsRNA, Ribosomal, 18SSensitivity and SpecificityDNA PrimersDNA, ProtozoanRNA, Ribosomal, 18SAmoebiasisDiagnosisEntamoeba histolyticaKenyaLoop-mediated isothermal amplification, LAMPStem-LAMP test

Identifiers

PMID28359328
PMCPMC5374617
OpenAlexW2601080315

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.