Evidence map›Paper›PMID 28359324›Full record

Observational studyJournal of neuroinflammation2017

Cerebrospinal fluid cell-free mitochondrial DNA is associated with HIV replication, iron transport, and mild HIV-associated neurocognitive impairment.

Sanjay R Mehta, Josué Pérez-Santiago, Todd Hulgan, Tyler R C Day, Jill Barnholtz-Sloan, Haley Gittleman, Scott Letendre, Ronald Ellis, Robert Heaton, Stephanie Patton and 14 more

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in Journal of neuroinflammation, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Article
  5. Cell-free DNA-based liquid biopsies in neurology.Brain : a journal of neurology · 2023
    Review
  6. Article
  7. New Perspectives on the Importance of Cell-Free DNA Biology.Diagnostics (Basel, Switzerland) · 2022
    Review
  8. Observational
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 9 institutions in 1 country.

Sanjay R MehtaDepartment of Medicine, University of California-San Diego, San Diego, CA, USA. srmehta@ucsd.edu.
Josué Pérez-SantiagoDepartment of Psychiatry, University of California, San Diego, CA, USA.
Todd HulganDepartment of Medicine, Division of Infectious Diseases, Vanderbilt University, Nashville, TN, USA.
Tyler R C DayDivision of Biostatistics, Washington University, St. Louis, MO, USA.
Jill Barnholtz-SloanCase Comprehensive Cancer Center, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Haley GittlemanCase Comprehensive Cancer Center, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Scott LetendreDepartment of Medicine, University of California-San Diego, San Diego, CA, USA.
Ronald EllisDepartment of Neurology, University of California-San Diego, San Diego, CA, USA.
Robert HeatonDepartment of Psychiatry, University of California, San Diego, CA, USA.
Stephanie PattonDepartment of Neurosurgery, Pennsylvania State/Hershey College of Medicine, Hershey, PA, USA.
Jesse D SubenDepartment of Medicine, University of California-San Diego, San Diego, CA, USA.
Donald FranklinDepartment of Psychiatry, University of California, San Diego, CA, USA.
Debralee RosarioDepartment of Psychiatry, University of California, San Diego, CA, USA.
David B CliffordDepartment of Neurology, Washington University, St. Louis, MO, USA.
Ann C CollierDepartment of Medicine, University of Washington, Seattle, WA, USA.
Christina M MarraDepartment of Neurology, University of Washington, Seattle, WA, USA.
Benjamin B GelmanDepartment of Pathology, University of Texas Medical Branch, Galveston, TX, USA.
Justin McArthurDepartment of Neurology, Johns Hopkins University, Baltimore, MD, USA.
Allen McCutchanDepartment of Medicine, University of California-San Diego, San Diego, CA, USA.
Susan MorgelloDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
David SimpsonDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
James ConnorDepartment of Neurosurgery, Pennsylvania State/Hershey College of Medicine, Hershey, PA, USA.
Igor GrantDepartment of Psychiatry, University of California, San Diego, CA, USA.
Asha KallianpurGenomic Medicine Institute/Lerner Research Institute Cleveland Clinic, Cleveland, OH, USA.
University of California, San Diego · USCase Western Reserve University · USIcahn School of Medicine at Mount Sinai · USPenn State Milton S. Hershey Medical Center · USUniversity of Washington · USWashington University in St. Louis · USJohns Hopkins University · USThe University of Texas Medical Branch at Galveston · USVanderbilt University · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SONIA JAIN · 1994 to 2026
$78.4M
STRUCTURAL NEUROIMAGING COREP30MH062512 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DAVID J MOORE · 2001 to 2026
$50.4M
Washington University Institute of Clinical and Translational SciencesUL1TR000448 · NCATS · WASHINGTON UNIVERSITY · PI EVANOFF, BRADLEY A · 2012 to 2016
$41.4M
Texas NeuroAIDS Research CenterU24MH100930 · NIMH · UNIVERSITY OF TEXAS MED BR GALVESTON · PI GELMAN, BENJAMIN B. · 2013 to 2023
$12.1M
Age related determinants of HAND: A 12 year follow-up of CHARTER participantsR01MH107345 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HEATON, ROBERT KERNACHAN, LETENDRE, SCOTT L · 2015 to 2021
$7.9M
WASHINGTON UNIVERSITY AIDS CLINICAL TRIALS UNITU01AI069495 · NIAID · WASHINGTON UNIVERSITY · PI CLIFFORD, DAVID B · 2007 to 2011
$7.7M
Iron and Mitochondrial Genomics in Neuro-inflammation and HAND: A CHARTER StudyR01MH095621 · NIMH · VANDERBILT UNIVERSITY MEDICAL CENTER · PI HULGAN, TODD M, KALLIANPUR, ASHA R · 2011 to 2015
$3.1M
WASHINGTON UNIVERSITY AIDS CLINICAL TRIALS UNITUM1AI069495 · NIAID · WASHINGTON UNIVERSITY · PI CLIFFORD, DAVID B · 2012 to 2013
$2.9M
Frailty and Brain Integrity in Older HIV-infected IndividualsR01NR014449 · NINR · WASHINGTON UNIVERSITY · PI ANCES, BEAU M · 2013 to 2017
$2.4M
Washington University Network of Excellence in Neuroscience Clinical Trials SiteU10NS077384 · NINDS · WASHINGTON UNIVERSITY · PI CLIFFORD, DAVID B · 2011 to 2017
$1.9M
NEUROIMAGING AND NEUROBEHAVIORAL BASIS OF RISKY DECISION-MAKING IN ADOLESCENTSR01NR012907 · NINR · WASHINGTON UNIVERSITY · PI ANCES, BEAU M · 2011 to 2015
$1.9M
THE EFFECTS OF AGE AND HIGHLY ACTIVE ANTIRETROVIRAL THERAPY ON BRAIN FUNCTIONR01NR012657 · NINR · WASHINGTON UNIVERSITY · PI ANCES, BEAU M · 2010 to 2014
$1.9M
NCATS NIH HHS UL1 TR000448NIAID NIH HHS K23 AI093163NIAID NIH HHS P30 AI036214NIAID NIH HHS U01 AI069495NIAID NIH HHS UM1 AI069495NIMH NIH HHS HHSN271201000030CNIMH NIH HHS HHSN271201000036CNIMH NIH HHS K24 MH097673NIMH NIH HHS N01 MH022005NIMH NIH HHS P30 MH062512NIMH NIH HHS R01 MH095621NIMH NIH HHS R01 MH107345NIMH NIH HHS U24 MH100930NINDS NIH HHS U10 NS077384NINR NIH HHS R01 NR012657NINR NIH HHS R01 NR012907NINR NIH HHS R01 NR014449
6 · The paper itself

Abstract

backgroundMitochondria are abundant organelles critical for energy metabolism and brain function. Mitochondrial DNA (mtDNA), released during cellular injury and as part of the innate immune response to viral pathogens, contains CpG motifs that act as TLR-9 ligands. We investigated relationships between cerebrospinal fluid (CSF) cell-free mtDNA levels and HIV viral load (VL), biomarkers of inflammation and iron transport, and neurocognitive (NC) function in the CNS HIV Antiretroviral Therapy Effects Research (CHARTER) cohort.

methodsWe quantified cell-free mtDNA in CSF by droplet digital PCR in 332 CHARTER participants who underwent comprehensive neuropsychiatric evaluation. NC performance was assessed using the global deficit score (GDS) as either a continuous or a binary measure (GDS ≥ 0.5, impaired vs. GDS < 0.5, unimpaired). CSF, clinical, and biomarker data from the earliest available time point were analyzed. Cell-free mtDNA associations with CSF inflammation and iron-related biomarkers [CXCL10, IL-6, IL-8, TNF-a, transferrin (TF), ceruloplasmin (CP), and vascular endothelial growth factor (VEGF)], VL, and GDS were evaluated by multivariable regression.

resultsCSF cell-free mtDNA levels were significantly lower in participants with undetectable (vs. detectable) VL in either plasma (p < 0.001) or CSF (p < 0.001) and in those on antiretroviral therapy (ART; p < 0.001). Participants on ART with undetectable VL in both CSF and plasma had lower mtDNA levels than those with detectable VL in both compartments (p = 0.001). Higher mtDNA levels were observed in participants in the highest vs. lowest tertile (T3 vs. T1) of CSF CXCL10 (T3 vs. T1, p < 0.001) and TNF-a (T3 vs. T1, p < 0.05) in unadjusted analyses. MtDNA levels also correlated with CSF leukocyte count. After adjusting for CSF leukocyte count and VL, mtDNA levels were also associated with other inflammation- and iron-related biomarkers in CSF, including TF (T3 vs. T1, p < 0.05) and CP (T3 vs. T1, p < 0.05). With additional correction for ART use, mtDNA was also negatively associated with CSF VEGF (p < 0.05) and IL-6 (p = 0.05). We observed no associations of CSF mtDNA levels with age or GDS-defined NC impairment.

conclusionsCSF cell-free mtDNA levels were associated with HIV RNA and ART status, as well as with biomarkers of iron transport and VEGF, a growth factor with known effects on mitochondrial integrity and autophagy. CSF mtDNA may be a biomarker of iron dysregulation and/or neuroinflammation during HIV infection.

Indexed as

AdultAIDS Dementia ComplexBiomarkersCell-Free Nucleic AcidsCohort StudiesCross-Sectional StudiesDNA, MitochondrialFemaleHIVHumansIronMaleMiddle AgedViral LoadVirus ReplicationBiomarkersCell-Free Nucleic AcidsDNA, MitochondrialIronCerebrospinal fluidHIVInflammationIronMitochondrial DNANeurocognitive impairment

Identifiers

PMID28359324
PMCPMC5374652
OpenAlexW2603786624

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.