Evidence map›Paper›PMID 28357539›Full record

ArticlePlanta2017

Screening of rice mutants with improved saccharification efficiency results in the identification of CONSTITUTIVE PHOTOMORPHOGENIC 1 and GOLD HULL AND INTERNODE 1.

Ko Hirano, Reiko Masuda, Wakana Takase, Yoichi Morinaka, Mayuko Kawamura, Yoshinobu Takeuchi, Hiroki Takagi, Hiroki Yaegashi, Satoshi Natsume, Ryohei Terauchi and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Ko HiranoBioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, 464-8601, Japan. khirano@nuagr1.agr.nagoya-u.ac.jp.
Reiko MasudaBioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, 464-8601, Japan.
Wakana TakaseBioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, 464-8601, Japan.
Yoichi MorinakaBioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, 464-8601, Japan.
Mayuko KawamuraBioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, 464-8601, Japan.
Yoshinobu TakeuchiRice Breeding Research Team, NARO Institute of Crop Science, Tsukuba, Ibaraki, Japan.
Hiroki TakagiIwate Biotechnology Research Center, Kitakami, Iwate, Japan.
Hiroki YaegashiIwate Biotechnology Research Center, Kitakami, Iwate, Japan.
Satoshi NatsumeIwate Biotechnology Research Center, Kitakami, Iwate, Japan.
Ryohei TerauchiIwate Biotechnology Research Center, Kitakami, Iwate, Japan.
Toshihisa KotakeGraduate School of Science and Engineering, Saitama University, Saitama, Japan.
Yasuyuki MatsushitaGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Aichi, Japan.
Takashi SazukaBioscience and Biotechnology Center, Nagoya University, Nagoya, Aichi, 464-8601, Japan.
Nagoya University · JPIwate Biotechnology Research Center · JPInstitute of Crop Science · JPSaitama University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MAIN

conclusionThe screening of rice mutants with improved cellulose to glucose saccharification efficiency (SE) identifies reduced xylan and/or ferulic acid, and a qualitative change of lignin to impact SE. To ensure the availability of sustainable energy, considerable effort is underway to utilize lignocellulosic plant biomass as feedstock for the production of biofuels. However, the high cost of degrading plant cell wall components to fermentable sugars (saccharification) has been problematic. One way to overcome this barrier is to develop plants possessing cell walls that are amenable to saccharification. In this study, we aimed to identify new molecular factors that influence saccharification efficiency (SE) in rice. By screening 22 rice mutants, we identified two lines, 122 and 108, with improved SE. Reduced xylan and ferulic acid within the cell wall of line 122 were probable reasons of improved SE. Line 108 showed reduced levels of thioglycolic-released lignin; however, the amount of Klason lignin was comparable to the wild-type, indicating that structural changes had occurred in the 108 lignin polymer which resulted in improved SE. Positional cloning revealed that the genes responsible for improved SE in 122 and 108 were rice CONSTITUTIVE PHOTOMORPHOGENIC 1 (OsCOP1) and GOLD HULL AND INTERNODE 1 (GH1), respectively, which have not been previously reported to influence SE. The screening of mutants for improved SE is an efficient approach to identify novel genes that affect SE, which is relevant in the development of crops as biofuel sources.

Indexed as

BiomassCelluloseCoumaric AcidsLigninOryzaPlant ProteinsPlants, Genetically ModifiedCelluloseCoumaric Acidsferulic acidLigninPlant ProteinsCelluloseFerulic acidLigninRice mutantXylan

Identifiers

PMID28357539
OpenAlexW2601904821

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.