Evidence map›Paper›PMID 28355564›Full record

ArticleCell reports2017

SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination.

Shu Xiao, Jia Lu, Bharat Sridhar, Xiaoyi Cao, Pengfei Yu, Tianyi Zhao, Chieh-Chun Chen, Darina McDee, Laura Sloofman, Yang Wang and 9 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 59 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. H3K27ac Is Essential for Human Naive Pluripotency Modulated by m6A-Driven EP300 Expression.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Citrullination and the protein code: crosstalk between post-translational modifications in cancer.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Review
  12. Citrullination: new tricks for an old mod.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  13. Article
  14. Article
  15. Arginine anchor points govern H3 tail dynamics.Frontiers in molecular biosciences · 2023
    Article
  16. Review
  17. Cells · 2022
    Article
  18. The virtues and vices of protein citrullination.Royal Society open science · 2022
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 1 country.

Shu XiaoDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA.
Jia LuDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA.
Bharat SridharDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA; Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Xiaoyi CaoDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA.
Pengfei YuDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA.
Tianyi ZhaoDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA.
Chieh-Chun ChenInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Darina McDeeDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA.
Laura SloofmanInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Yang WangSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.
Marcelo Rivas-AstrozaDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA.
Bhanu Prakash V L TeluguDepartment of Animal and Avian Sciences, University of Maryland, College Park, MD 20742, USA.
Dana LevasseurDepartment of Internal Medicine, Carver College of Medicine, University of Iowa, Iowa City, IA 52242, USA.
Kang ZhangDepartment of Ophthalmology, University of California, San Diego, La Jolla, CA 92093, USA.
Han LiangDepartment of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA.
Jing Crystal ZhaoSanford Burnham Prebys Medical Discovery Institute, La Jolla, CA 92037, USA.
Tetsuya S TanakaInstitute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Gary StormoDepartment of Genetics, Washington University at St. Louis, St. Louis, MO 63108, USA.
Sheng ZhongDepartment of Bioengineering, University of California, San Diego, La Jolla, CA 92093, USA. Electronic address: szhong@ucsd.edu.
University of California, San Diego · USUniversity of Illinois Urbana-Champaign · USDiscovery Institute · USSanford Burnham Prebys Medical Discovery Institute · USThe University of Texas MD Anderson Cancer Center · USUniversity of Iowa · USUniversity of Maryland, College Park · USWashington University in St. Louis · US

Funding

DNA PATTERN IDENTIFICATION AND ANALYSISR01HG000249 · NHGRI · WASHINGTON UNIVERSITY · PI STORMO, GARY D · 1990 to 2017
$5.6M
Mapping RNA interactomes by sequencingDP1HD087990 · NICHD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHONG, SHENG · 2015 to 2019
$3.9M
Molecular Mechanism and Therapy for Ocular MelanomaR01CA217642 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER · 2017 to 2022
$2.4M
Evolutionary models for gene regulatory networksDP2OD007417 · OD · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI ZHONG, SHENG · 2010 to 2010
$2.3M
Non-coding Variants Predisposing to Age-related Macular DegenerationR01HG008135 · NHGRI · LUDWIG INSTITUTE FOR CANCER RES LTD · PI REN, BING, ZHANG, KANG · 2015 to 2017
$2.3M
Limbal Stem Cell Fate and Corneal Specific EnhancersR01EY025090 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SEN, GEORGE L, ZHANG, KANG · 2015 to 2018
$1.9M
Role of post-transcriptional RNA methylation in the regulation of RNA activityR01GM110090 · NIGMS · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ZHAO, CRYSTAL · 2015 to 2019
$1.9M
NCI NIH HHS R01 CA217642NEI NIH HHS R01 EY025090NHGRI NIH HHS R01 HG000249NHGRI NIH HHS R01 HG008135NICHD NIH HHS DP1 HD087990NIGMS NIH HHS R01 GM110090NIH HHS DP2 OD007417
6 · The paper itself

Abstract

Histone citrullination regulates diverse cellular processes. Here, we report that SMARCAD1 preferentially associates with H3 arginine 26 citrullination (H3R26Cit) peptides present on arrays composed of 384 histone peptides harboring distinct post-transcriptional modifications. Among ten histone modifications assayed by ChIP-seq, H3R26Cit exhibited the most extensive genomewide co-localization with SMARCAD1 binding. Increased Smarcad1 expression correlated with naive pluripotency in pre-implantation embryos. In the presence of LIF, Smarcad1 knockdown (KD) embryonic stem cells lost naive state phenotypes but remained pluripotent, as suggested by morphology, gene expression, histone modifications, alkaline phosphatase activity, energy metabolism, embryoid bodies, teratoma, and chimeras. The majority of H3R26Cit ChIP-seq peaks occupied by SMARCAD1 were associated with increased levels of H3K9me3 in Smarcad1 KD cells. Inhibition of H3Cit induced H3K9me3 at the overlapping regions of H3R26Cit peaks and SMARCAD1 peaks. These data suggest a model in which SMARCAD1 regulates naive pluripotency by interacting with H3R26Cit and suppressing heterochromatin formation.

Indexed as

CitrullinationAnimalsBase SequenceBinding SitesCells, CulturedChromatinDNA HelicasesEmbryo, MammalianEmbryonic DevelopmentEmbryonic Stem CellsEpigenesis, GeneticFemaleGene Knockdown TechniquesGenomeHistonesLysineChromatinDNA HelicasesHistonesLysineNuclear ProteinsSmarcad1 protein, mouseChIP-seqcitrullinationhistone modificationnaive statepluripotencyprotein arraySMARCAD1stem cells

Identifiers

PMID28355564
PMCPMC5466819
OpenAlexW2601536312

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.