Evidence map›Paper›PMID 28355554›Full record

ArticleBiophysical journal2017

Hydrodynamic Hunters.

Hossein Jashnsaz, Mohammed Al Juboori, Corey Weistuch, Nicholas Miller, Tyler Nguyen, Viktoria Meyerhoff, Bryan McCoy, Stephanie Perkins, Ross Wallgren, Bruce D Ray and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Biophysical journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
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  7. Article
  8. Origins of eukaryotic excitability.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  9. Article
  10. Frontiers in microbiology · 2020
    Article
  11. Article
  12. Article
  13. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Hossein JashnsazDepartment of Physics, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Mohammed Al JubooriBiomedical Engineering, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Corey WeistuchDepartment of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, New York; Department of Biochemistry and Cell Biology, Stony Brook University, Stony Brook, New York.
Nicholas MillerBiomedical Engineering, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Tyler NguyenStark Neurosciences Research Institute, Indiana University School of Medicine (ISUM), Indianapolis, Indiana.
Viktoria MeyerhoffMechanical Engineering, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Bryan McCoyDepartment of Chemistry and Chemical Biology, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Stephanie PerkinsDepartment of Biology, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Ross WallgrenDepartment of Mathematical Sciences, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Bruce D RayDepartment of Physics, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Konstantinos TsekourasDepartment of Physics, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana.
Gregory G AndersonDepartment of Biology, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana. Electronic address: ga2@iupui.edu.
Steve PresséDepartment of Physics, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana; Department of Chemistry and Chemical Biology, Indiana University - Purdue University Indianapolis (IUPUI), Indianapolis, Indiana; Cellular and Integrative Physiology Department, Indiana University School of Medicine (IUSM), Indianapolis, Indiana. Electronic address: stevenpresse@gmail.com.
Indiana University – Purdue University Indianapolis · USIndiana University School of MedicineStony Brook University · US

Funding

A novel bacterial protease and its involvement in wound infectionR03AR068724 · NIAMS · INDIANA UNIVERSITY INDIANAPOLIS · PI ANDERSON, GREGORY G, KUSMIERCZYK, ANDREW R · 2015 to 2017
$229k
NIAMS NIH HHS R03 AR068724
6 · The paper itself

Abstract

The Gram-negative Bdellovibrio bacteriovorus (BV) is a model bacterial predator that hunts other bacteria and may serve as a living antibiotic. Despite over 50 years since its discovery, it is suggested that BV probably collides into its prey at random. It remains unclear to what degree, if any, BV uses chemical cues to target its prey. The targeted search problem by the predator for its prey in three dimensions is a difficult problem: it requires the predator to sensitively detect prey and forecast its mobile prey's future position on the basis of previously detected signal. Here instead we find that rather than chemically detecting prey, hydrodynamics forces BV into regions high in prey density, thereby improving its odds of a chance collision with prey and ultimately reducing BV's search space for prey. We do so by showing that BV's dynamics are strongly influenced by self-generated hydrodynamic flow fields forcing BV onto surfaces and, for large enough defects on surfaces, forcing BV in orbital motion around these defects. Key experimental controls and calculations recapitulate the hydrodynamic origin of these behaviors. While BV's prey (Escherichia coli) are too small to trap BV in hydrodynamic orbit, the prey are also susceptible to their own hydrodynamic fields, substantially confining them to surfaces and defects where mobile predator and prey density is now dramatically enhanced. Colocalization, driven by hydrodynamics, ultimately reduces BV's search space for prey from three to two dimensions (on surfaces) even down to a single dimension (around defects). We conclude that BV's search for individual prey remains random, as suggested in the literature, but confined, however-by generic hydrodynamic forces-to reduced dimensionality.

Indexed as

HydrodynamicsBdellovibrio bacteriovorusEscherichia coliStochastic Processes

Identifiers

PMID28355554
PMCPMC5376100
OpenAlexW4232190510

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.