ArticlePloS one2017
Genome-wide association analysis identifies resistance loci for bacterial blight in a diverse collection of indica rice germplasm.
Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 48 citations in OpenAlex.
- Recent Progress in Rice-Biology · 2025Review
- Genome-Wide Association-Based Identification of Alleles, Genes and Haplotypes Influencing Yield in Rice (International journal of molecular sciences · 2024Article
- Defining genomic landscape for identification of potential candidate resistance genes associated with major rice diseases through MetaQTL analysis.Journal of biosciences · 2024Article
- Superior haplotypes towards the development of blast and bacterial blight-resistant rice.Frontiers in plant science · 2024Article
- Rice breeding for low input agriculture.Frontiers in plant science · 2024Review
- Genome-Wide Association Study Identifies Resistance Loci for Bacterial Blight in a Collection of Asian TemperateInternational journal of molecular sciences · 2023Article
- Genome-Wide Association Study Identifies a Rice Panicle Blast Resistance Gene,International journal of molecular sciences · 2022Article
- Rice (Oryza sativa L.) cytochrome P450 protein 716A subfamily CYP716A16 regulates disease resistance.BMC genomics · 2022Article
- Identification of rice (Oryza sativa L.) genes involved in sheath blight resistance via a genome-wide association study.Plant biotechnology journal · 2021Article
- Genome-Wide Association Mapping and Gene Expression Analysis Reveal the Negative Role of OsMYB21 in Regulating Bacterial Blight Resistance in Rice.Rice (New York, N.Y.) · 2021Article
- Genome-wide association study and transcriptome analysis discover new genes for bacterial leaf blight resistance in rice (Oryza sativa L.).BMC plant biology · 2021Article
- Genome-wide association mapping for resistance to bacterial blight and bacterial leaf streak in rice.Planta · 2021Article
- Identification of Bacterial Blight Resistance Loci in Rice (Plants (Basel, Switzerland) · 2021Article
- Genome-Wide Association Study Dissects Resistance Loci against Bacterial Blight in a Diverse Rice Panel from the 3000 Rice Genomes Project.Rice (New York, N.Y.) · 2021Article
- Article
- Genome-Wide Association Analysis Identifies Resistance Loci for Bacterial Leaf Streak Resistance in Rice (Plants (Basel, Switzerland) · 2020Article
- Genome-wide association study identifies an NLR gene that confers partial resistance to Magnaporthe oryzae in rice.Plant biotechnology journal · 2020Article
- Rice Stress-Resistant SNP Database.Rice (New York, N.Y.) · 2019Article
- Genome-Wide Association Analysis of the Genetic Basis for Sheath Blight Resistance in Rice.Rice (New York, N.Y.) · 2019Article
- RiceMetaSysB: a database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes.Database : the journal of biological databases and curation · 2019Article
Corrections and comments
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Authors and funding
8 authors at 3 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Bacterial blight, which is caused by Xanthomonas oryzae pv. oryzae (Xoo), is one of the most devastating rice diseases worldwide. The development and use of disease-resistant cultivars have been the most effective strategy to control bacterial blight. Identifying the genes mediating bacterial blight resistance is a prerequisite for breeding cultivars with broad-spectrum and durable resistance. We herein describe a genome-wide association study involving 172 diverse Oryza sativa ssp. indica accessions to identify loci influencing the resistance to representative strains of six Xoo races. Twelve resistance loci containing 121 significantly associated signals were identified using 317,894 single nucleotide polymorphisms, which explained 13.3-59.9% of the variability in lesion length caused by Xoo races P1, P6, and P9a. Two hotspot regions (L11 and L12) were located within or nearby two cloned R genes (xa25 and Xa26) and one fine-mapped R gene (Xa4). Our results confirmed the relatively high resolution of genome-wide association studies. Moreover, we detected novel significant associations on chromosomes 2, 3, and 6-10. Haplotype analyses of xa25, the Xa26 paralog (MRKc; LOC_Os11g47290), and a Xa4 candidate gene (LOC_11g46870) revealed differences in bacterial blight resistance among indica subgroups. These differences were responsible for the observed variations in lesion lengths resulting from infections by Xoo races P1 and P9a. Our findings may be relevant for future studies involving bacterial blight resistance gene cloning, and provide insights into the genetic basis for bacterial blight resistance in indica rice, which may be useful for knowledge-based crop improvement.
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