Evidence map›Paper›PMID 28353150›Full record

ArticleJournal of physiology and biochemistry2016

Gene methylation parallelisms between peripheral blood cells and oral mucosa samples in relation to overweight.

Rodrigo San-Cristobal, Santiago Navas-Carretero, Fermín I Milagro, J Ignacio Riezu-Boj, Elizabeth Guruceaga, Carlos Celis-Morales, Katherine M Livingstone, Lorraine Brennan, Julie A Lovegrove, Hannelore Daniel and 7 more

Erratum issuedAbstract readComparative Study
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In one paragraph

Article in Journal of physiology and biochemistry, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Rodrigo San-CristobalDepartment of Nutrition, Food Science and Physiology, Centre for Nutrition Research, University of Navarra, Pamplona, Spain. rsan.1@alumni.unav.es.ORCID http://orcid.org/0000-0001-8054-6553
Santiago Navas-CarreteroDepartment of Nutrition, Food Science and Physiology, Centre for Nutrition Research, University of Navarra, Pamplona, Spain.
Fermín I MilagroDepartment of Nutrition, Food Science and Physiology, Centre for Nutrition Research, University of Navarra, Pamplona, Spain.
J Ignacio Riezu-BojDepartment of Nutrition, Food Science and Physiology, Centre for Nutrition Research, University of Navarra, Pamplona, Spain.
Elizabeth GuruceagaInstituto de Investigación Sanitaria de Navarra (IdiSNA), Pamplona, Spain.
Carlos Celis-MoralesHuman Nutrition Research Centre, Institute of Cellular Medicine, Newcastle University, Campus for Ageing and Vitality, Newcastle Upon Tyne, UK.
Katherine M LivingstoneHuman Nutrition Research Centre, Institute of Cellular Medicine, Newcastle University, Campus for Ageing and Vitality, Newcastle Upon Tyne, UK.
Lorraine BrennanUCD Institute of Food and Health, University College Dublin, Belfield, Dublin 4, Republic of Ireland.
Julie A LovegroveHugh Sinclair Unit of Human Nutrition and Institute for Cardiovascular and Metabolic Research, University of Reading, Reading, UK.
Hannelore DanielZIEL Research Center of Nutrition and Food Sciences, Biochemistry Unit, Technische Universität München, Munich, Germany.
Wim H SarisDepartment of Human Biology, NUTRIM, School for Nutrition and Translational Research in Metabolism, Maastricht University Medical Centre, Maastricht, The Netherlands.
Iwonna TraczykDepartment of Human Nutrition, Faculty on Health Sciences, Medical University of Warsaw, Warsaw, Poland.
Yannis ManiosDepartment of Nutrition and Dietetics, Harokopio University, Athens, Greece.
Eileen R GibneyUCD Institute of Food and Health, University College Dublin, Belfield, Dublin 4, Republic of Ireland.
Michael J GibneyUCD Institute of Food and Health, University College Dublin, Belfield, Dublin 4, Republic of Ireland.
John C MathersHuman Nutrition Research Centre, Institute of Cellular Medicine, Newcastle University, Campus for Ageing and Vitality, Newcastle Upon Tyne, UK.
J Alfredo MartinezDepartment of Nutrition, Food Science and Physiology, Centre for Nutrition Research, University of Navarra, Pamplona, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetics has an important role in the regulation of metabolic adaptation to environmental modifications. In this sense, the determination of epigenetic changes in non-invasive samples during the development of metabolic diseases could play an important role in the procedures in primary healthcare practice. To help translate the knowledge of epigenetics to public health practice, the present study aims to explore the parallelism of methylation levels between white blood cells and buccal samples in relation to obesity and associated disorders. Blood and buccal swap samples were collected from a subsample of the Spanish cohort of the Food4Me study. Infinium HumanMethylation450 DNA Analysis was carried out for the determination of methylation levels. Standard deviation for β values method and concordance correlation analysis were used to select those CpG which showed best parallelism between samples. A total of 277 CpGs met the criteria and were selected for an enrichment analysis and a correlation analysis with anthropometrical and clinical parameters. From those selected CpGs, four presented high associations with BMI (cg01055691 in GAP43; r = -0.92 and rho = -0.84 for blood; r = -0.89 and rho = -0.83 for buccal sample), HOMA-IR (cg00095677 in ATP2A3; r = 0.82 and rho = -0.84 for blood; r = -0.8 and rho = -0.83 for buccal sample) and leptin (cg14464133 in ADARB2; r = -0.9182 and rho = -0.94 for blood; r = -0.893 and rho = -0.79 for buccal sample). These findings demonstrate the potential application of non-invasive buccal samples in the identification of surrogate epigenetic biomarkers and identify methylation sites in GAP43, ATP2A3 and ADARB2 genes as potential targets in relation to overweight management and insulin sensibility.

Indexed as

DNA MethylationAdultCpG IslandsEpigenesis, GeneticFemaleHumansLeukocytesMaleMouth MucosaOverweightMethylationMirror tissuesObesityParallelismSurrogate tissues

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.