Evidence map›Paper›PMID 28351383›Full record

ArticleGenome biology2017

Diverse interventions that extend mouse lifespan suppress shared age-associated epigenetic changes at critical gene regulatory regions.

John J Cole, Neil A Robertson, Mohammed Iqbal Rather, John P Thomson, Tony McBryan, Duncan Sproul, Tina Wang, Claire Brock, William Clark, Trey Ideker and 4 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed, 1 pooled it
10.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed, 1 synthesis or guideline pooled it, 197 citations in OpenAlex.

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68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

John J ColeBeatson Institute for Cancer Research and University of Glasgow, Garscube Estate, G61 1BD, UK.
Neil A RobertsonBeatson Institute for Cancer Research and University of Glasgow, Garscube Estate, G61 1BD, UK.
Mohammed Iqbal RatherBeatson Institute for Cancer Research and University of Glasgow, Garscube Estate, G61 1BD, UK.
John P ThomsonMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK.
Tony McBryanBeatson Institute for Cancer Research and University of Glasgow, Garscube Estate, G61 1BD, UK.
Duncan SproulMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK.
Tina WangDepartment of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Claire BrockBeatson Institute for Cancer Research and University of Glasgow, Garscube Estate, G61 1BD, UK.
William ClarkBeatson Institute for Cancer Research and University of Glasgow, Garscube Estate, G61 1BD, UK.
Trey IdekerDepartment of Medicine, University of California San Diego, La Jolla, CA, 92093, USA.
Richard R MeehanMRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Crewe Road, Edinburgh, UK.
Richard A MillerDepartment of Pathology and Glenn Center for the Biology of Aging, University of Michigan, Ann Arbor, MI, 48109, USA.
Holly M Brown-BorgDepartment of Biomedical Sciences, University of North Dakota School of Medicine and Health Sciences, Grand Forks, ND, 58203, USA. holly.brown.borg@med.und.edu.
Peter D AdamsBeatson Institute for Cancer Research and University of Glasgow, Garscube Estate, G61 1BD, UK. p.adams@beatson.gla.ac.uk.
University of Glasgow · GBWestern General Hospital · GBUniversity of California, San Diego · USCancer Research UK Scotland Institute · GBDiscovery Institute · USUniversity of Michigan–Ann Arbor · USUniversity of North Dakota · US

Funding

Research Education CoreP30AG024824 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Neil Alexander · 2004 to 2026
$29.2M
STRUCTURAL BASIS FOR EPIGENETICS IN AGING AND LONGEVITYP01AG031862 · NIA · WISTAR INSTITUTE · PI ZHANG, RUGANG · 2008 to 2022
$28.3M
Laboratory for Anti-Geric Testing, Evaluation and ResearchU01AG022303 · NIA · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RICHARD A MILLER · 2003 to 2026
$25.4M
SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Longevity genes and calorie restriction: early post-natal effectsR01AG019899 · NIA · SOUTHERN ILLINOIS UNIVERSITY SCH OF MED · PI BARTKE, ANDRZEJ · 2001 to 2016
$6.1M
Role of growth hormone in thiol metabolism, stress resistance and agingR01AG034206 · NIA · UNIVERSITY OF NORTH DAKOTA · PI BROWN-BORG, HOLLY M. · 2009 to 2013
$1.4M
Role of GH on thiol metabolism, stress resistance and agingK02AG038509 · NIA · UNIVERSITY OF NORTH DAKOTA · PI BROWN-BORG, HOLLY M. · 2010 to 2014
$575k
Cancer Research UK 20837Cancer Research UK C47648/A20837Medical Research Council MC_PC_U127574433NIA NIH HHS K02 AG038509NIA NIH HHS P01 AG031862NIA NIH HHS P30 AG024824NIA NIH HHS R01 AG019899NIA NIH HHS R01 AG034206NIA NIH HHS U01 AG022303NIGMS NIH HHS P50 GM085764NIGMS NIH HHS T32 GM008666
6 · The paper itself

Abstract

backgroundAge-associated epigenetic changes are implicated in aging. Notably, age-associated DNA methylation changes comprise a so-called aging "clock", a robust biomarker of aging. However, while genetic, dietary and drug interventions can extend lifespan, their impact on the epigenome is uncharacterised. To fill this knowledge gap, we defined age-associated DNA methylation changes at the whole-genome, single-nucleotide level in mouse liver and tested the impact of longevity-promoting interventions, specifically the Ames dwarf Prop1

resultsIn wild-type mice fed an unsupplemented ad libitum diet, age-associated hypomethylation was enriched at super-enhancers in highly expressed genes critical for liver function. Genes harbouring hypomethylated enhancers were enriched for genes that change expression with age. Hypermethylation was enriched at CpG islands marked with bivalent activating and repressing histone modifications and resembled hypermethylation in liver cancer. Age-associated methylation changes are suppressed in Ames dwarf and calorie restricted mice and more selectively and less specifically in rapamycin treated mice.

conclusionsAge-associated hypo- and hypermethylation events occur at distinct regulatory features of the genome. Distinct longevity-promoting interventions, specifically genetic, dietary and drug interventions, suppress some age-associated methylation changes, consistent with the idea that these interventions exert their beneficial effects, in part, by modulation of the epigenome. This study is a foundation to understand the epigenetic contribution to healthy aging and longevity and the molecular basis of the DNA methylation clock.

Indexed as

Epigenesis, GeneticEpigenomicsGene Expression RegulationRegulatory Sequences, Nucleic AcidAgingAnimalsCluster AnalysisCpG IslandsDNA MethylationDwarfismEnhancer Elements, GeneticFemaleLiverLongevityMaleMice

Identifiers

PMID28351383
PMCPMC5370462
OpenAlexW2603290806

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.