ArticleScientific data2017
Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids.
Article in Scientific data, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 49 papers.
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Who cites it
49 citing papers in PubMed, 86 citations in OpenAlex.
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- Unveiling the life of archaea in sediments: Diversity, metabolic potentials, and ecological roles.iMetaOmics · 2025Review
- Carbon metabolic versatility underpins Bathyarchaeia ecological significance across the global deep subsurface.The ISME journal · 2025Review
- Microbial ecology of the deep terrestrial subsurface.The ISME journal · 2024Review
- Life strategies for Aminicenantia in subseafloor oceanic crust.The ISME journal · 2023Article
- Replicated life-history patterns and subsurface origins of the bacterial sister phyla Nitrospirota and Nitrospinota.The ISME journal · 2023Article
- Trait biases in microbial reference genomes.Scientific data · 2023Article
- Carbon metabolism and biogeography of candidate phylum "Frontiers in microbiology · 2023Article
- Metabolic versatility ofFrontiers in microbiology · 2023Article
- The expanding Asgard archaea invoke novel insights into Tree of Life and eukaryogenesis.mLife · 2022Article
- Genomic remnants of ancestral methanogenesis and hydrogenotrophy in Archaea drive anaerobic carbon cycling.Science advances · 2022Article
- Prokaryotes of renowned Karlovy Vary (Carlsbad) thermal springs: phylogenetic and cultivation analysis.Environmental microbiome · 2022Article
- Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily.The ISME journal · 2022Article
- Article
- Pathways of Iron and Sulfur Acquisition, Cofactor Assembly, Destination, and Storage in Diverse Archaeal Methanogens and Alkanotrophs.Journal of bacteriology · 2021Article
- A standardized archaeal taxonomy for the Genome Taxonomy Database.Nature microbiology · 2021Article
- Microorganisms from deep-sea hydrothermal vents.Marine life science & technology · 2021Review
- Oceanic Crustal Fluid Single Cell Genomics Complements Metagenomic and Metatranscriptomic Surveys With Orders of Magnitude Less Sample Volume.Frontiers in microbiology · 2021Article
Corrections and comments
- Erratum issued
Authors and funding
3 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The global deep subsurface biosphere is one of the largest reservoirs for microbial life on our planet. This study takes advantage of new sampling technologies and couples them with improvements to DNA sequencing and associated informatics tools to reconstruct the genomes of uncultivated Bacteria and Archaea from fluids collected deep within the Juan de Fuca Ridge subseafloor. Here, we generated two metagenomes from borehole observatories located 311 meters apart and, using binning tools, retrieved 98 genomes from metagenomes (GFMs). Of the GFMs, 31 were estimated to be >90% complete, while an additional 17 were >70% complete. Phylogenomic analysis revealed 53 bacterial and 45 archaeal GFMs, of which nearly all were distantly related to known cultivated isolates. In the GFMs, abundant Bacteria included Chloroflexi, Nitrospirae, Acetothermia (OP1), EM3, Aminicenantes (OP8), Gammaproteobacteria, and Deltaproteobacteria, while abundant Archaea included Archaeoglobi, Bathyarchaeota (MCG), and Marine Benthic Group E (MBG-E). These data are the first GFMs reconstructed from the deep basaltic subseafloor biosphere, and provide a dataset available for further interrogation.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.