Evidence map›Paper›PMID 28350330›Full record

ReviewInternational journal of molecular sciences2017

It Is Imperative to Establish a Pellucid Definition of Chimeric RNA and to Clear Up a Lot of Confusion in the Relevant Research.

Chengfu Yuan, Yaping Han, Lucas Zellmer, Wenxiu Yang, Zhizhong Guan, Wenfeng Yu, Hai Huang, D Joshua Liao

Abstract readReview
In one paragraph

Review in International journal of molecular sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
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  10. Review
  11. Article
  12. Chimeric RNAs and their implications in cancer.Current opinion in genetics & development · 2018
    Review
  13. Review
  14. Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Chengfu YuanDepartment of Biochemistry, China Three Gorges University, Yichang 443002, China. yuancf46@ctgu.edu.cn.
Yaping HanHormel Institute, University of Minnesota, Austin, MN 55912, USA. yhen@hi.umn.edu.
Lucas ZellmerHormel Institute, University of Minnesota, Austin, MN 55912, USA. luc.zellmer@gmail.com.
Wenxiu YangDepartment of Pathology, Guizhou Medical University Hospital, Guiyang 550004, China. ypq1964@163.com.
Zhizhong GuanKey Lab of Endemic and Ethnic Diseases of the Ministry of Education of China in Guizhou Medical University, Guiyang 550004, China. zhizhongguan@gmc.edu.cn.
Wenfeng YuKey Lab of Endemic and Ethnic Diseases of the Ministry of Education of China in Guizhou Medical University, Guiyang 550004, China. wenfengyu2013@126.com.
Hai HuangSchool of Clinical Laboratory Science, Guizhou Medical University, Guiyang 550004, China. huanghai828@gmc.edu.cn.
D Joshua LiaoDepartment of Biochemistry, China Three Gorges University, Yichang 443002, China. djliao@gmc.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

There have been tens of thousands of RNAs deposited in different databases that contain sequences of two genes and are coined chimeric RNAs, or chimeras. However, "chimeric RNA" has never been lucidly defined, partly because "gene" itself is still ill-defined and because the means of production for many RNAs is unclear. Since the number of putative chimeras is soaring, it is imperative to establish a pellucid definition for it, in order to differentiate chimeras from regular RNAs. Otherwise, not only will chimeric RNA studies be misled but also characterization of fusion genes and unannotated genes will be hindered. We propose that only those RNAs that are formed by joining two RNA transcripts together without a fusion gene as a genomic basis should be regarded as authentic chimeras, whereas those RNAs transcribed as, and

Indexed as

Databases, Nucleic AcidTerminology as TopicAnimalsBase SequenceHumansResearchRNARNAchimeric RNAexpression sequence tagpolymerase chain reactionsreverse transcriptionRNA deep sequencingtrans-splicing

Identifiers

PMID28350330
PMCPMC5412300

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.